Publications from HSRL

2022, 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014,
2013, 2012, 2011, 2010, 2009, 2008, 2007, 2006,
2005, 2004, 2003, 2002, 2001, 2000, 1999, 1998

Click here for Delaware Bay Oyster Stock Assessment Reports.
Additional documents are available on the HSRL documents page.


Acquafredda, M. P., N. Morris, L. Ragone Calvo, M. De Luca, & D. M. Munroe. (2022). Evaluating the efficacy of nursery gear types for cultivating Atlantic surfclams (Spisula solidissima). Aquaculture Reports, 25: 101186. DOI: 10.1016/j.aqrep.2022.101186

Ben-Horin, T., C. Audemard, L. Calvo, K. S. Reece, & D. Bushek. (2022). Pathogenic vibrio parahaemolyticus increase in intertidal-farmed oysters in the Mid-Atlantic region, but only at low tide. North American Journal of Aquaculture, 84 (1), 95-104. DOI: 10.1002/naaq.10218

Borsetti, S., J. Wiedenmann, & D. M. Munroe. (2022). Evaluation of natural mortality of an unfished gastropod (Buccinum undatum) population using statolith age-frequency data in the southern Mid-Atlantic Bight. Aquaculture, Fish and Fisheries, 2 (3): 243-251. DOI: 10.1002/aff2.47

Li, C., H. Wang, & X. Guo. (2022). Regulation of the cell cycle, apoptosis, and proline accumulation plays an important role in the stress response of the Eastern oyster Crassostrea virginica. Frontiers in Marine Science, 9: 921877. DOI: 10.3389/fmars.2022.921877M

Munroe, D. M., E. N. Powell, J. M. Klinck, A. M. Scheld, S. Borsetti, J. Beckensteiner, & E. E. Hofmann. (2022). The Atlantic surfclam fishery and offshore wind energy development: 1. Model development and verification. ICES Journal of Marine Science. Advance online publication. DOI: 10.1093/icesjms/fsac108

Pousse, E., D. M. Munroe, D. Hart, D. Hennen, L. Cameron, J. Rheuban, Z. A. Wang, G. Wikfors, & S. Meseck. (2022). Dynamic energy budget modeling of Atlantic surfclam, Spisula solidissima, under future ocean acidification and warming. Marine Environmental Research, 177: 105602. DOI: 10.1016/j.marenvres.2022.105602

Scheld, A. M., J. Beckensteiner, D. M. Munroe, E. N. Powell, S. Borsetti, E. E. Hofmann, & J. M. Klinck. (2022). The Atlantic surfclam fishery and offshore wind energy development: 2. Assessing economic impacts. ICES Journal of Marine Science. Advance online publication. DOI: 10.1093/icesjms/fsac109

Zeng, D., & X. Guo. (2022). Mantle transcriptome provides insights into biomineralization and growth regulation in the eastern oyster (Crassostrea virginica). Marine Biotechnology, 24, 82-96. DOI: 10.1007/s10126-021-10088-7

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Acquafredda, M., X. Guo, & D. M. Munroe. (2021). Exploring the feasibility of selectively breeding farmed Atlantic surfclams Spisula solidissima for greater heat tolerance. North American Journal of Aquaculture, 83 3-14. DOI: 10.1002/naaq.10168

Ashton-Alcox, K. A., J. M. Morson, E. N. Powell, J. E. Gius, D. M. Munroe, & D. Bushek. (2021). Oyster recruitment and persistence on planted versus native substrate over 13 years in the Delaware Bay oyster fishery resource. Journal of Shellfish Research, 40 (2), 191-211. DOI: 10.2983/035.040.0202

Bochenek, E. A., & E. N. Powell. (2021). Time of day affects squid catch in the U.S. Illex illecebrosus squid fishery. Regional Studies in Marine Science, 44: 101666. DOI: 10.1016/j.rsma.2021.101666

Borsetti, S., P. R. Hollyman, & D. M. Munroe. (2021). Using a sclerochronological approach to determine a climate-growth relationship for waved whelk, Buccinum undatum, in the U.S. Mid-Atlantic. Estuarine, Coastal and Shelf Science, 252: 107255. DOI: 10.1016/j.ecss.2021.107255

Bushek, D. (2021). In Memoriam: Walter J. Canzonier. National Shellfisheries Association Quarterly Newsletter, 2021 (3), 6.

Chan, J., L. Wang, L. Li, K. Mu, D. Bushek, Y. Xu, X. Guo, G. Zhang, & L. Zhang. (2021). Transcriptomic response to Perkinsus marinus in two Crassostrea oysters reveals evolutionary dynamics of host-parasite interactions. Frontiers in Genetics, 12: 795706. DOI: 10.3389/fgene.2021.795706

Chang, J.-H., D. R. Hart, D. M. Munroe, & E. N. Curchitser. (2021). Bias correction of ocean bottom temperature and salinity simulations from a regional circulation model using regression kriging. Journal of Geophysical Research: Oceans, 126 (4): e2020JC017140. DOI: 10.1029/2020JC017140

Cui, Z., L. Hu, C. Li, Z. Zhang, X. Guo, & H. Wang. (2021). Identification of Saccostrea mordax and a new species Saccostrea mordoides sp. nov. (Bivalvia: Ostreidae) from China. Journal of Shellfish Research, 40 (1), 63-75. DOI: 10.2983/035.040.0107

Elko, N., D. Foster, G. Kleinheinz, B. Raubenheimer, S. Brander, J. Kinzelman, J. P. Kritzer, D. M. Munroe, C. Storlazzi, M. Sutula, A. Mercer, S. Coffin, C. Fraioli, L. Ginger, E. Morrison, G. Parent-Doliner, C. Akan, A. Canestrelli, M. DiBenedetto, J. Lang, & J. Simm. (2021). Human and ecosystem health in coastal systems. Shore & Beach, 90 (1), 64-91. DOI: 10.34237/1009018

Guo, X. (2021). Genetics in shellfish aquaculture. In Shumway, S. E. (Ed.), Molluscan shellfish Aquaculture: A practical guide (pp.393-413). Essex, UK: 5m Books Ltd. Retrieved from

Kraeuter, J. N., & B. Beal. (2021). Clam aquaculture. In Shumway, S. E. (Ed.), Molluscan shellfish Aquaculture: A practical guide (pp.41-60). Essex, UK: 5m Books Ltd. Retrieved from

Li, A., H. Dai, X. Guo, Z. Zhang, K. Zhang, C. Wang, X. Wang, W. Wang, H. Chen, X. Li, H. Zheng, L. Li, & G. Zhang. (2021). Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity. Communications Biology, 4: 1287. DOI: 10.1038/s42003-021-02823-6

Li, A., L. Li, Z. Zhang, S. Li, W. Wang, X. Guo, & G. Zhang. (2021). Noncoding variation and transcriptional plasticity promote thermal adaptation in oysters by altering energy metabolism. Molecular Biology and Evolution, 38 (11), 5144-5155. DOI: 10.1093/molbev/msab241

Miles, T., S. Murphy, J. Kohut, S. Borsetti, & D. M. Munroe. (2021). Offshore wind energy and the Mid-Atlantic Cold Pool: A review of potential interactions. Marine Technology Society Journal, 55 (4), 72-87. DOI: 10.4031/MTSJ.55.4.8

Modak, T. H., R. Literman, J. B. Puritz, K. M. Johnson, E. M. Roberts, D. Proestou, X. Guo, M. Gomez-Chiarri, & R. S. Schwartz. (2021). Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica). Philosophical Transactions of the Royal Society B, 376: 20200164. DOI: 10.1098/rstb.2020.0164

Morris, R. L., M. K. La Peyre, B. M. Webb, D. A. Marshall, D. M. Bilkovic, J. Cebrian, G. McClenachan, K. M. Kibler, L. J. Walters, D. Bushek, E. L. Sparks, N. A. Temple, J. Moody, K. Angstadt, J. Goff, M. Boswell, P. Sacks, & S. E. Swearer. (2021). Large-scale variation in wave attenuation of oyster reef living shorelines and the influence of inundation duration. Ecological Applications, 31 (6):e02382. DOI: 10.1002/eap.2382

Munroe, D. M. (2021). Ecological Interactions Among Wildlife and Shellfish Farms: A Case Study from New Jersey, USA, on Horseshoe Crabs and Oyster Farms. In K. Jabanoski, C. Otoshi, E. Sturm, and M. Rust (editors). Marine Aquaculture in a Changing Environment: Proceedings of the 46th U.S.-Japan Aquaculture Panel Symposium (pp. 89-96).

Paukert, C., J. D. Olden, A. J. Lynch, D. D. Breshears, R. C. Chambers, C. Chu, M. Daly, K. L. Dibble, J. Falke, D. Issak, P. Jacobson, O. Jensen, & D. Munroe. (2021). Climate change effects on North American fish and fisheries to inform adaptation strategies. Fisheries, 46 (9), 449-464. DOI: 10.1002/fsh.10668

Peñaloza, C., A. P. Gutierrez, L. Eöry, S. Wang, X. Guo, A. L. Archibald, T. P. Bean, & R. D. Houston. (2021). A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas. GigaScience, 10 (3): giab020. DOI: 10.1093/gigascience/giab020

Shinn, J. P., D. M. Munroe, & J. M. Rose. (2021). Fish’s-eye-view: Shellfish farms as marine habitat in New Jersey. Aquaculture Environment Interactions, 13, 295-300. DOI: 10.3354/aei00407

Shinn, J. (2021). A.F. Chestnut - Honored Life Member. National Shellfisheries Association Quarterly Newsletter, 2021 (3), 10.

Song, H., X. Guo, L. Sun, Q. Wang, F. Han, H. Wang, G. A. Wray, P. Davidson, Q. Wang, Z. Hu, C. Zhou, Z. Yu, M. Yang, J. Feng, P. Shi, Y. Zhou, L. Zhang, & T. Zhang. (2021). The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia. BMC Biology, 19: 15. DOI: 10.1186/s12915-020-00943-9

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Acquafredda, M. P., & D. M. Munroe. (2020). The effect of species diversity on particle clearance and productivity in farmed bivalves. Marine Ecology Progress Series, 639, 107-126. DOI: 10.3354/meps13266 -or- Full article

Barr, J. M., C. Bean, & J. McDonnell. (2020). Strategies for Running a Successful Virtual Career Panel. Oceanography, 20 Aug. 2020. DOI: 10.5670/oceanog.2020.220 -or- Full article

Behringer, D. C., C. L. Wood, M. Krkosek, & D. Bushek. (2020). Disease in fisheries and aquaculture. In D. C. Behringer, B. R. Silliman, & K. D. Lafferty (Eds.), Marine Disease Ecology (pp. 183-212). New York, NY: Oxford University Press. DOI: 10.1093/oso/9780198821632.003.0010/p>

Birthisel, S. K., B. A. Eastman, A. R. Soucy, M. Paul, R. S. Clements, A. White, M. P. Acquafredda, W. Errickson, L-H Zhu, , M. C. Allen, S. A. Mills, G. Dimmig, & K. M. Dittmer. (2020). Convergence, continuity, and community: a framework for enabling emerging leaders to build climate solutions in agriculture, forestry, and aquaculture. Climatic Change. Advance online publication, 1-15. DOI: 10.1007/s10584-020-02844-w -or- Full article

Borsetti, S., D. M. Munroe, D. Rudders, & J.-H. Chang. (2020). Timing of the reproductive cycle of waved whelk, Buccinum undatum, on the U.S. Mid-Atlantic Bight. Helgoland Marine Research, 74: 5. DOI: 10.1186/s10152-020-00537-6 -or- Full article

Farhat, S., A. Tanguy, E. Pales Espinosa, X. Guo, I. Boutet, R. Smolowitz, D. Murphy, G. J. Rivara, & B. Allam. (2020). Identification of variants associated with hard clam, Mercenaria mercenaria, resistance to Quahog Parasite Unknown disease. Genomics, 112 (6), 4887-4896. DOI: 10.1016/j.ygeno.2020.08.036

Hart, D. R., D. M. Munroe, J. C. Caracappa, D. Haidvogel, B. V. Shank, D. B. Rudders, J. M. Klinck, E. E. Hofmann, & E. N. Powell. (2020). Spillover of sea scallops from rotational closures in the Mid-Atlantic Bight (United States). ICES Journal of Marine Science 77 (5), 1992-2002. DOI: 10.1093/icesjms/fsaa099

Hemeon, K. M., K. A. Ashton-Alcox, E. N. Powell, S. M. Pace, L. M. Poussard, L. K. Solinger, & T. M. Soniat. (2020). Novel shell stock–recruitment models for Crassostrea virginica as a function of regional shell effective surface area, a missing link for sustainable management. Journal of Shellfish Research, 39 (3), 633-654. DOI: 10.2983/035.039.0310

Liu, J., Q. Zeng, H. Wang, M. Teng, X. Guo, Z. Bao, & S. Wang. (2020). The complete mitochondrial genome and phylogenetic analysis of the dwarf surf clam Mulinia lateralis. Mitochondrial DNA Part B, 5 (1), 140-141. DOI: 10.1080/23802359.2019.1698352

Mann, R., E. N. Powell, & D. M. Munroe. (2020). The case of the 'missing' Arctic bivalves and the walrus: The biggest [overlooked] clam fishery on the planet. Journal of Shellfish Research, 39 (3), 501-509. DOI: 10.2983/035.039.0301

Maslo, B., J. C. Burkhalter, D. Bushek, T. Yuhas, B. Schumm, J. Burger, & J. L. Lockwood. (2020). Assessing conservation conflict: Does intertidal oyster aquaculture inhibit foraging behavior of migratory shorebirds? Ecosphere, 11 (5): e03097. DOI: 10.1002/ecs2.3097 -or- Full article

Munroe D. M., T. M. Grothues, N. E. Cleary, J. Daw, & S. Estrada. (2020). Oyster aquaculture does not impede spawning beach access for Atlantic horseshoe crabs Limulus polyphemus. Aquaculture Environment Interactions, 12, 81-90. DOI: 10.3354/aei00351 -or- Full article

Pace, S. M., L. M. Poussard, E. N. Powell, K. A. Ashton-Alcox, K. M. Kuykendall, L. K. Solinger, K. M. Hemeon, & T. M. Soniat. (2020). Dying, decaying, and dissolving into irrelevance: First direct in-the-field estimate of Crassostrea virginica shell loss—a case history from Mississippi Sound. Journal of Shellfish Research, 39 (2), 245-256. DOI: 10.2983/035.039.0206

Pousse, E., M. E. Poach, D. H. Redman, G. Sennefelder, L. E. White, J. M. Lindsay, D. M. Munroe, D. Hard, D. Hennen, M. S. Dixon, Y. Li, G. H. Wikfors, & S. L. Meseck. (2020). Energetic response of Atlantic surfclam, Spisula solidissima, to ocean acidification. Marine Pollution Bulletin, 161 (B): 111740. DOI: 10.1016/j.marpolbul.2020.111740

Powell, E. N., & K. A. Ashton-Alcox. (2020). Response of petroleum seep mussels to changing environmental conditions: Parasite transmission, infection intensification, and health. Deep Sea Research Part I: Oceanographic Research Papers, 166: 103408. DOI: 10.1016/j.dsr.2020.103408

Yeh, H. D., J. M. Questel, K. R. Maas, & A. Bucklin. (2020). Metabarcoding analysis of regional variation in gut contents of the copepod Calanus finmarchicus in the North Atlantic Ocean. Deep Sea Research Part II: Topical Studies in Oceanography, 171: 104738. DOI: 10.1016/j.dsr2.2020.104738

Yeh, H., S. A. Skubel, H. Patel, D. C. Shi, D. Bushek, & M. L. Chikindas. (2020). From farm to fingers: An exploration of probiotics for oysters, from production to human consumption. (2020). Probiotics and Antimicrobial Proteins Online First. DOI: 10.1007/s12602-019-09629-3 -or- Full article

Zemeckis, D. R., J. Kneebone, C. W. Capizzano, E. A. Bochenek, W. S. Hoffmann, T. Grothues, J. W. Mandelman, & O. P. Jensen. (2020). Discard mortality of black sea bass (Centropristas striata) in a deepwater recreational fishery off New Jersey : role of swim bladder venting in reducing mortality. Fishery Bulletin, 118 (2): 105-119. DOI: 10.7755/FB.118.2.1 -or- Full article

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Acquafredda, M. P., D. M. Munroe, L. Calvo,& M. DeLuca. (2019). The effect of rearing temperature on the survival and growth of early juvenile Atlantic surfclams (Spisula solidissima). Aquaculture Reports, 13: 100176. DOI: 10.1016/j.aqrep.2018.100176

Bayne, B., M. Anglès d'Auriac, T. Backeljau, P. Beninger, P. Boudry, R. Carnegie, J. Davis, X. Guo, D. Hedgecock, M. Krause, C. Langdon, S. Lapègue, D. Manahan, R. Mann, E. N. Powell, & S. Shumway. (2019). A scientific name for Pacific oysters. Aquaculture, 499, 373. DOI: 10.1016/j.aquaculture.2018.08.048

Caracappa, J. C., & D. M. Munroe. (2019). Variability in swimming behavior among broods of blue crab (Callinectes sapidus) zoeae. Journal of Experimental Marine Biology and Ecology, 518: 151176. DOI: 10.1016/j.jembe.2019.151176

Goodwin, J. D., D. M. Munroe, Z. Defne, N. K. Ganju, & J. Vasslides. (2019). Estimating connectivity of hard clam (Mercenaria mercenaria) and eastern oyster (Crassostrea virginica) larvae in Barnegat Bay. Journal of Marine Science and Engineering, 7: 167. DOI: 10.3390/jmse7060167

Hu, L., H. Wang, Z. Zhang, C. Li, & X. Guo. (2019). Classification of small flat oysters of Ostrea stentina species complex and a new species Ostrea neostentina sp. nov. (Bivalvia: Ostreidae). Journal of Shellfish Research, 38 (2), 295-308. DOI: 10.2983/035.038.0210

Jiao, Y., Y. Cao, Z. Zheng, M. Liu, & X. Guo. (2019). Massive expansion and diversity of nicotinic acetylcholine receptors in lophotrochozoans. BMC Genomics, 20: 937. DOI: 10.1186/s12864-019-6278-9

Lafont, M., P. Goncalves, X. Guo, C. Montagnani, D. Raftos, & T. Green. (2019). Transgenerational plasticity and antiviral immunity in the Pacific oyster (Crassostrea gigas) against Ostreid herpesvirus 1 (OsHV-1). Developmental & Comparative Immunology, 91, 17-25. DOI: 10.1016/j.dci.2018.09.022

Morris, R. L., D. M. Bilkovic, M. K. Boswell, D. Bushek, J. Cebrian, J. Goff, K. M. Kibler, M. K. La Peyre, G. McClenachan, J. Moody, P. Sacks, J. P. Shinn, E. L. Sparks, N. A. Temple, L. J. Walters, B. M. Webb, & S. E. Swearer. (2019). Oyster reefs in shoreline protection: are we over-engineering for an ecosystem engineer? Journal of Applied Ecology, 56 (7), 1703-1711. DOI: 10.1111/1365-2664.13390

Morson, J. M., T. M. Grothues, & K. W. Able. (2019). Change in larval fish assemblage in a USA east coast estuary estimated from twenty-six years of fixed weekly sampling. PLoS ONE, 14 (10): e0224157. DOI: 10.1371/journal.pone.0224157

Poach, M., D. Munroe, J. Vasslides, I. Abrahamsen, & N. Coffey. (2019). Monitoring coastal acidification along the U.S. East Coast: Concerns for shellfish production. Bulletin of Japan Fisheries Research and Education Agency, 49, 53-64. Full article

Turley, B., K. Reece, J. Shen, J.-H. Lee, X. Guo, & J. McDowell. (2019). Multiple drivers of interannual oyster settlement and recruitment in the lower Chesapeake Bay. Conservation Genetics, 20, 1057–1071. DOI: 10.1007/s10592-019-01194-0

Yang, H., X. Guo, & J. Scarpa. (2019). Tetraploid induction and establishment of breeding stocks for all-triploid seed production. EDIS, 2019 (3). DOI: 10.32473/edis-fa215-2019

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Ben-Horin, T., C. Burge, D. Bushek, M. Groner, D. Proestou, L. Huey, G. Bidegain, & R. Carnegie. (2018). Intensive oyster aquaculture can reduce disease impacts to sympatric wild oysters. Aquaculture Environment Interactions, 10, 557–567. DOI: 10.3354/aei00290

Borsetti, S., D. Munroe, D. Rudders, C. Dobson, & E. A. Bochenek. (2018). Spatial variation in life history characteristics of waved whelk (Buccinum undatum L.) on the U.S. Mid-Atlantic Continental Shelf. Fisheries Research, 198, 129-137. DOI: 10.1016/j.fishres.2017.10.006

Bushek, D., & R. Carnegie. (2018). In Memorium: Susan Elizabeth Ford, 1942 - 2017. Journal of Shellfish Research, 37 (4), 671-678. DOI: 10.2983/035.037.0401

Caracappa, J. C., & D. M. Munroe. (2018). Morphological Variability among Broods of First Stage Blue Crab (Callinectes sapidus) Zoeae. Biological Bulletin, 235 (3), 123-133. DOI: 10.1086/699922

Ford, S. E., N. A. Stokes, K. A. Ashton-Alcox, B. S. F. Kraus, R. D. Barber, R. B. Carnegie, & E. M. Burreson. (2018). Investigating the life cycle of Haplosporidium nelsoni (Msx): A review. Journal of Shellfish Research, 37 (4), 679-693. DOI: 10.2983/035.037.0402

Guo, X., C. Li, & H. Wang. (2018). Diversity and evolution of living oysters. Journal of Shellfish Research, 37 (4), 755-771. DOI: 10.2983/035.037.0407

Hennen, D., R. Mann, D. Munroe, & E. Powell. (2018). Biological reference points for Atlantic surfclam (Spisula solidissima) in warming seas. Fisheries Research, 207, 126-139. DOI: 10.1016/j.fishres.2018.06.013

Hofmann, E. E., E. N. Powell, J. Klinck, D. Munroe, R. Mann, D. Haidvogel, D. A. Narváez, X. Zhang, & K. M. Kuykendall. (2018). An overview of factors affecting distribution of the Atlantic surfclam (Spisula solidissima), a continental shelf biomass dominant, during a period of climate change. Journal of Shellfish Research, 37 (4), 821-831. DOI: 10.2983/035.037.0412

Li, L., A. Li, K. Song, J. Meng, X. Guo, S. Li, C. Li, P. D. Wit, H. Que, F. Wu, W. Wang, H. Qi, F. Xu1, R. Cong, B. Huang, Y. Li, T. Wang, X. Tang, S. Liu, B. Li, R. Shi, Y. Liu, C. Bu, C. Zhang, W. He, S. Zhao, H. Li, S. Zhang, L. Zhang, & G. Zhang. (2018). Divergence and plasticity shape adaptive potential in the Pacific oyster. Nature Ecology & Evolution, 2, 1751-1760. DOI: 10.1038/s41559-018-0668-2

Morson, J. M., D. Munroe, K. A. Ashton-Alcox, E. N. Powell, D. Bushek, & J. E. Gius. (2018). Density-dependent capture efficiency of a survey dredge and its influence on the stock assessment of eastern oysters (Crassostrea virginica) in Delaware Bay. Fisheries Research, 205, 115-121. DOI: 10.1016/j.fishres.2018.04.012

Munroe, D., D. Haidvogel, J. Caracappa, J. M. Klinck, E. N. Powell, E. E. Hofmann, B. Shank, & D. Hart. (2018). Modeling larval dispersal and connectivity in the Atlantic sea scallop (Placopecten magellanicus) in the Middle Atlantic Bight. Fisheries Research, 208, 7-15. DOI: 10.1016/j.fishres.2018.06.020

Thongda, W., H. Zhao, D. Zhang, L. N. Jescovitch, M. Liu, X. Guo, M. Schrandt, S. P. Powers, & E. Peatman. (2018). Development of SNP panels as a new tool to assess the genetic diversity, population structure, and parentage analysis of the eastern oyster (Crassostrea virginica). Marine Biotechnology, 20, 385-395. DOI: 10.1007/s10126-018-9803-y

Watts, J., J. Carroll, D. Munroe, & C. Finelli. (2018). Examination of the potential relationship between boring sponges and pea crabs and their effects on eastern oyster condition. Diseases of Aquatic Organisms, 130, 25-36. DOI: 10.3354/dao03257

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Abdelrahman, H., M. ElHady, A. Alcivar-Warren, S. Allen, R. Al-Tobasei, L. Bao, B. Beck, H. Blackburn, B. Bosworth, J. Buchanan, J. Chappell, W. Daniels, S. Dong, R. Dunham, E. Durland, A. Elaswad, M. Gomez-Chiarri, K. Gosh, X. Guo, P. Hackett, T. Hanson, D. Hedgecock, T. Howard, L. Holland, M. Jackson, Y. Jin, K. Khalil, T. Kocher, T. Leeds, N. Li, L. Lindsey, S. Liu, Z. Liu, K. Martin, R. Novriadi, R. Odin, Y. Palti, E. Peatman, D. Proestou, G. Qin, B. Reading, C. Rexroad, S. Roberts, M. Salem, A. Severin, H. Shi, C. Shoemaker, S. Stiles, S. Tan, K. F. J. Tang, W. Thongda, T. Tiersch, J. Tomasso, W. T. Prabowo, R. Vallejo, H. van der Steen, K. Vo, G. Waldbieser, H. Wang, X. Wang, J. Xiang, Y. Yang, R. Yant, Z. Yuan, Q. Zeng & T. Zhou. 2017. Aquaculture genomics, genetics and breeding in the United States: Current status, challenges, and priorities for future research. BMC Genomics 18, 191. DOI: 10.1186/s12864-017-3557-1

Bayne, B. L., M. Ahrens, S. K. Allen, M. Anglès D'auriac, T. Backeljau, P. Beninger, R. Bohn, P. Boudry, J. Davis, T. Green, X. Guo, D. Hedgecock, A. Ibarra, P. Kingsley-Smith, M. Krause, C. Langdon, S. Lapègue, C. Li, D. Manahan, R. Mann, L. Perez-Paralle, E. N. Powell, P. D. Rawson, D. Speiser, J.-L. Sanchez, S. Shumway, & H. Wang. 2017. The proposed dropping of the Genus Crassostrea for all Pacific cupped oysters and its replacement by a new Genus Magallana: A dissenting view. Journal of Shellfish Research, 36(3):545-547. DOI: 10.2983/035.036.0301

Bidegain, G., E.N. Powell, J.M. Klinck, E.E. Hofmann, T. Ben-Horin, D. Bushek, S.E. Ford, D.M. Munroe, X. Guo, 2017. Modeling the transmission of Perkinsus marinus in the Eastern oyster Crassostrea virginica, Fisheries Research, 186(1):82-93. DOI: 10.1016/j.fishres.2016.08.00

Bricelj, V. M., J. N. Kraeuter, & G. Flimlin. (2017). Status and trends of hard clam, Mercenaria mercenaria, populations in a coastal lagoon ecosystem, Barnegat Bay-Little Egg Harbor, New Jersey. Journal of Coastal Research, 78 (sp1), 205-253. DOI: 10.2112/SI78-016.1

Du, X., G. Fan, Y. Jiao, H. Zhang, X. Guo, R. Huang, C. Bian, Y. Deng, Q. Wang, Z. Zheng, Z. Wang, X. Liang, H. Liang, C. Shi, X. Zhao, F. Sun, R. Hao, J. Bai, J. Liu, W. Chen, J. Liang, W. Liu, Z. Xu, Q. Shi, X. Xu, G. Zhang & Xin Liu. 2017. The pearl oyster, Pinctada fucata martensii, genome and multi-omic analyses provide insights into biomineralization. GigaScience, 6(8):1-12. DOI: 10.1093/gigascience/gix059

Grothues, T. M., E. A. Bochenek, & S. Martin. 2017. Reducing discards of flatfish in the sea scallop dredge fishery by dredge pause. Journal of Shellfish Research, 36(2):365-371. DOI: 10.2983/035.036.0311

Li, C., H. Wang and X. Guo. 2017. Classification and taxonomic revision of two oyster species from Peru: Ostrea megodon (Hanley, 1846) and Crassostrea talonata (Li & Qi, 1994). Journal of Shellfish Research, 36(2):359–364. DOI: 10.2983/035.036.0208

Li, C., M. Haws, H. Wang and X. Guo. 2017. Taxonomic classification of three oyster (Ostreidae) species from Myanmar. Journal of Shellfish Research, 36(2):365-371. DOI: 10.2983/035.036.0209

Li, Y., X. Sun, X. Hu, X. Xun, J. Zhang, X. Guo, W. Jiao, L. Zhang, W. Liu, J. Wang, J. Li, Y. Sun, Y. Miao, X. Zhang, T. Cheng, G. Xu, X. Fu, Y. Wang, X. Yu, X. Huang, W. Lu, J. Lv, C. Mu, D. Wang, X. Li, Y. Xia, Y. Li, Z. Yang, F. Wang, L. Zhang, Q. Xing, H. Dou, X. Ning, J. Dou, Y. Li, D. Kong, Y. Liu, Z. Jiang, R. Li, S. Wang, & Z. Bao. 2017. Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins. Nature Communications, 8: 1721. DOI: 10.1038/s41467-017-01927-0

Liu, M. and X. Guo. 2017. A novel and stress adaptive alternative oxidase derived from alternative splicing of duplicated exon in oyster Crassostrea virginica. Scientific Reports, 7:10785. DOI: 10.1038/s41598-017-10976-w

Marenghi, F., K. A. Ashton-Alcox, R. Wong, B. Reynolds, G. Ozbay. 2017. Dredge efficiency on natural oyster grounds in Delaware Bay and its application in monitoring the Eastern oyster (Crassostrea virginica) stock in Delaware, USA. Fisheries Research, 186(1):292-300. DOI: 10.1016/j.fishres.2016.10.007

Morson, J. M., D. Munroe, R. Harner, R. Marshall. 2017. Evaluating the potential for a sex-balanced harvest approach in the recreational Summer Flounder (Paralichthys dentatus) fishery. North American Journal of Fisheries Management 37(6):1231-1242. DOI: 10.1080/02755947.2017.1362490

Munroe, D., D. Bushek, P. Woodruff, L. Calvo. 2017. Intertidal rack-and-bag oyster farms have limited interaction with horseshoe crab activity in New Jersey, USA. Aquaculture Environment Interactions, 9:205-211. DOI: 10.3354/aei00227

Munroe, D., S. Borsetti, K. A. Ashton-Alcox and D. Bushek. 2017. Early post-settlement growth in wild Eastern oyster (Crassostrea virginica Gemlin 1791) populations. Estuaries and Coasts. 40(3):880-888. DOI: 10.1007/s12237-016-0185-y

Paterno J., L. Calvo, R. Jordan and D. Bushek. 2017.Activity: One fish, two fish-Assessing the habitat value of restored oyster reefs: Using scientific research in the classroom. Current: The Journal of Marine Education, 31(1):2-10.

Powell, E. N., R. Mann, K. A. Ashton-Alcox, K. M. Kuykendall, M. C. Long. 2017. Can we estimate molluscan abundance and biomass on the continental shelf? Estuarine, Coastal and Shelf Science 198(A):213–224. DOI: 10.1016/j.ecss.2017.09.012

Riviere, G., Y. He, S. Tecchio, E. Crowell, M. Gras, P. Sourdaine, X. Guo and P. Favrel. 2017. Dynamics of DNA methylomes underlie oyster development. PLOS Genetics, 13(6):e1006807. DOI: 10.1371/journal.pgen.1006807

Wang, S., J. Zhang, W. Jiao, J. Li, X. Xun, Y. Sun, X. Guo, P. Huan, B. Dong, L. Zhang, X. Hu, X. Sun, J. Wang, C. Zhao, Y. Wang, D. Wang, X. Huang, R. Wang, J. Lv, Y. Li, Z. Zhang, B. Liu, W. Lu, Y. Hui, J. Liang, Z. Zhou, R. Hou, X. Li, Y. Liu, H. Li, X. Ning, Y. Lin, L. Zhao, Q. Xing, J. Dou, Y. Li, J. Mao, H. Guo, H. Dou, T. Li, C. Mu, W. Jiang, Q. Fu, X. Fu, Y. Miao, J. Liu, Q. Yu, R. Li, H. Liao, X. Li, Y. Kong, Z. Jiang, D. Chourrout, R. Li & Z. Bao. 2017. Scallop genome provides insights into evolution of bilaterian karyotype and development. Nature Ecology & Evolution, 1: 0120. DOI: 10.1038/s41559-017-0120

Yang, H. and X. Guo. 2017. Triploid hard clams Mercenaria mercenaria produced by inhibiting polar body I or polar body II. Aquaculture Research, 00:1-13. DOI: 10.1111/are.13476

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Ben-Horin, T., K.D. Lafferty, G. Bidegain, H.S. Lenihan. 2016. Fishing diseased abalone to promote yield and conservation. Philosophical Transactions Royal Society B, 371:20150211. DOI: 10.1098/rstb.2015.0211

Bushek, D., R. Carnegie and G. Flimlin. 2016. Honored Life Member John N. Kraeuter, March 28, 2012. Journal of Shellfish Research, 35(2):277-278. DOI: 10.2983/035.035.0202

Bushek, D., R. Carnegie and G. Flimlin. 2016. Honored Life Member Susan E. Ford, March 28, 2012. Journal of Shellfish Research, 35(2):275-276. DOI: 10.2983/035.035.0201

Bushek, D. and S.E. Ford. 2016. Anthropogenic impacts on an oyster metapopulation: pathogen introduction, climate change and responses to natural selection.  Elementa: Science of the Anthropocene, 4:119. DOI: 10.12952/journal.elementa.000119

Carnegie, R.B., I. Arzul, D. Bushek. 2016. Managing marine mollusc diseases in the context of regional and international commerce: policy issues and emerging concerns. 2016. Philosophical Transactions Royal Society B, 371:20150215. DOI: 10.1098/rsb.2015.021

Guo, X. and S.E. Ford. Infectious diseases of marine molluscs and host responses as revealed by genomic tools. 2016. Philosophical Transactions Royal Society B, 371:20150206. DOI: 10.1098/rstb.2015.0206

Guo, X. and Y. Luo. 2016. Chapter 22 - Scallops and scallop Aquaculture in China. Developments in Aquaculture and Fisheries Science, 40:937-952. DOI: 10.1016/B978-0-444-62710-0.00022-5

Kraeuter, J.N. 2016. Bivalve aquaculture. In: Kennish, M.J. (Ed.) Encyclopedia of Estuaries. Springer, Netherlands. pp.85-88. DOI: 10.1007/978-94-017-8801-4_54

Luckenbach, M.W., J.N. Kraeuter and D. Bushek. 2016. Effects of clam aquaculture on nektonic and benthic assemblages in two shallow-water estuaries. Journal of Shellfish Research, 35(4):757-775. DOI: 10.2983/035.035.0405

McGurk, E.S., S. Ford and D. Bushek. 2016. Unusually abundant and large ciliate xenomas in oysters, Crassostrea virginica, from Great Bay, New Hampshire, USA. Journal of Invertebrate Pathology, 137:23-32. DOI: 10.1016/j.jip.2016.04.001.

Munroe, D. 2016. Habitat effects on early post-settlement growth of intertidal clams, Venerupis philippinarum (A. Adams & Reeve, 1850). Journal of Molluscan Studies, 82(4): 507-514. DOI: 10.1093/mollus/eyw014

Munroe, D.M., D. A. Narváez, D. Hennen, L. Jacobsen, R. Mann, E.E. Hofmann, E.N. Powell, J.M. Klinck. 2016. Fishing and bottom water temperature as drivers of change in maximum shell length in Atlantic surfclams (Spisula solidissima) Estuarine, Coastal and Shelf Science, 170:112-122. DOI: 10.1016/j.ecss.2016.01

Powell, E.N., J.M. Klinck, E.E. Hofmann, P. Moreno, K.M. Kuykendall, D.M. Munroe and R. Mann. 2016. Captains' response to a declining stock as anticipated in the surfclam (Spisula solidissima) fishery on the U.S. Mid-Atlantic coast by model evaluation. Ocean & Coastal Management, 134:52-68. DOI: 10.1016/j.ocecoaman.2016.09.012

Powell, E. N., R. Mann, K. A. Ashton-Alcox, Y. Kim and D. Bushek. 2016. The allometry of oysters: spatial and temporal variation in the length–biomass relationships for Crassostrea virginica. Journal of the Marine Biological Association of the United Kingdom, 96(5):1127-1144. DOI: 10.1017/S0025315415000703

Proestou, D.A., B.T. Vinyard, R.J. Corbett, J. Piesz, S.K. Allen Jr., J.M. Small, C. Li, M. Liu, G. DeBrosse, X. Guo, P. Rawson, M. Gómez-Chiarri. 2016. Performance of selectively-bred lines of eastern oyster, Crassostrea virginica, across eastern US estuaries. Aquaculture, 461:17-27. DOI: 10.1016/j.aquaculture.2016.06.012

Pechenik, J.A., O.R. Chaparro, A. Pilnick, M. Karp, M. Acquafredda and R. Burns. 2016. Effects of embryonic exposure to salinity stress or hypoxia on post-metamorphic growth and survival of the polychaete Capitella teleta. The Biological Bulletin, 231(2):103-112. DOI: 10.1086/690090

Ren, J., Z. Hou, H. Wang, M. Sun, X. Liu, B. Liu and X. Guo. 2016. Intraspecific variation in mitogenomes of five Crassostrea species provides insight into oyster diversification and speciation. Marine Biotechnology, 18(2):242-254. DOI: 10.1007/s10126-016-9686-8

Zhang, X., D. Munroe, D. Haidvogel, E.N. Powell. 2016. Atlantic surfclam connectivity within the Middle Atlantic Bight: Mechanisms underlying variation in larval transport and settlement. Estuarine, Coastal and Shelf Science, 173: 65-78. DOI: 10.1016/j.ecss.2016.02.019

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Ben-Horin, T., G. Bidegain, L. Huey, D. A. Narváez, D. Bushek. 2015. Parasite transmission through suspension feeding, Journal of Invertebrate Pathology, 131:155-176. DOI: 10.1016/j.jip.2015.07.006

Carrasco, N., S. Ford, R. Anderson. 2015. Pathogens and disease processes in marine molluscs. Journal of Invertebrate Pathology, 131:1 (Editors' Preface to Special Issue). DOI: 10.1016/j.jip.2015.09.005

Dungan, C.F., D. Bushek. 2015. Development and applications of Ray’s fluid thioglycollate media for detection and manipulation of Perkinsus spp. pathogens of marine molluscs. Journal of Invertebrate Pathology, 131:68-82. DOI: 10.1016/j.jip.2015.05.004

Gómez-Chiarri, M., X. Guo, A. Tanguy, Y. He and D. Proestou. 2015. The use of -omic tools in the study of disease processes in marine bivalve mollusks.  Journal of Invertebrate Pathology, 131:137-154. DOI: 10.1016/j.jip.2015.05.007

Gómez-Chiarri, M., W.C. Warren, X. Guo and D. Proestou. 2015. Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica. Fish & Shellfish Immunology, 46(1):2-4. DOI: 10.1016/j.fsi.2015.05.004

Guo, X., Y. He, L. Zhang, C. Lelong and A. Jouaux. 2015. Immune and stress responses in oysters with insights on adaptation. Fish & Shellfish Immunology, 46(1):107-119. DOI: 10.1016/j.fsi.2015.05.018

He, Y., A. Jouaux, S. Ford, C. Lelong, P. Sourdaine, M. Mathieu and X. Guo. 2015. Transcriptome analysis reveals strong and complex antiviral response in a mollusc. Fish & Shellfish Immunology, 46(1):13 -144. DOI: 10.1016/j.fsi.2015.05.023

Kuykendall, KM, Moreno, P, Powell, EN, Soniat, TM, Colley, S, Mann, R, Munroe, DM. 2015. The exposed surface area to volume ratio: Is shell more efficient than limestone in promoting oyster recruitment? Journal of Shellfish Research, 34(2): 217-225. DOI: 10.2983/035.034.0203

McDermott, J. J., & J. N. Kraeuter. (2015). Occurrence of first crab instars of the Atlantic ghost crab Ocypode quadrata(Decapoda: Brachyura: Ocypodidae) along the coast of Maine, USA. Proceedings of the Biological Society of Washington, 128 (1), 98-102. DOI: 10.2988/0006-324X-128.1.98

Morson, J. M., E. A. Bochenek, E. N. Powell, E. C. Hasbrouck, J. E. Gius, C. F. Cotton, K. Gerbino and T. Froehlich. 2015. Estimating the sex composition of the summer flounder catch using fishery-independent data. Marine and Coastal Fisheries 7(1):393-408. DOI: 10.1080/19425120.2015.1067261

Munroe, DM, Kraeuter, J., Beal, B., Chew, K., Luckenbach, M., Peterson, CP. 2015. Clam predator protection is effective and necessary for food  production. Marine Pollution Bulletin 100(1): 47-52. DOI: 10.1016/j.marpolbul.2015.09.042.

Munroe, D.M., Powell, E.N., Ford, S.E., Hofmann, E.E., Klinck, J.M. 2015. Outcomes of asymmetric selection pressure and larval dispersal on the evolution of disease resistance: a metapopulation modeling study with oysters. Mar. Ecol. Prog. Ser. DOI: 10.3354/meps11349

Narváez, D. A., D. Munroe, E. Hofmann, J. Klinck, E. Powell, R. Mann and E. Curchitser. 2015. Long-term dynamics in Atlantic surfclam (Spisula solidissima) populations: The role of bottom water temperature. J. Mar. Sys. 141: 136-148. DOI: 10.1016/j.jmarsys.2014.08.007

Powell, E. N., J. M. Klinck, D. M. Munroe, E. E. Hofmann, P. Moreno and R. Mann. 2015. The Value of Captains’ Behavioral Choices in the Success of the Surfclam (Spisula solidissima) Fishery on the U.S. Mid-Atlantic Coast: a Model Evaluation. J. Northw. Atl. Fish. Sci., 47: 1–27. DOI: 10.2960/J.v47.m701

Powell, E. N., Y. Kim and D. Bushek. 2015. Temporal structure and trends of parasites and pathologies in U.S. Oysters and mussels: 16 years of mussel watch. Journal of Shellfish Research, 34(3):967-993. DOI: 10.2983/035.034.0325

Rolton, A., S. Philippe, J. Vignier, Pierce, R., R. Pierce, M. Henry, S.E. Shumway, V.M. Bricelj, A. K. Volety, 2015. Susceptibility of gametes and embryos of the eastern oyster, Crassostrea virginica, to Karenia brevis and its toxins. Toxicon 99:6-15. DOI: 10.1016/j.toxicon.2015.03.002

Ross, A.C., Najjar, R.G., Li, M., Mann, M.E., Ford, S.E. and Katz, B. 2015.  Sea-level rise and other influences on decadal-scale salinity variability in a coastal plain estuary.  Estuarine, Coastal and Shelf Sci. 157: 79-92. DOI: 10.1016/j.ecss.2015.01.022

Zarnoch, C.B., J.N. Kraeuter, B.F. Beal, V. M. Bricelj, G. Flimlin and D. Bushek. 2015. Geographic origin and culture method influence the overwinter mortality of juvenile hard clams, Mercenaria mercenaria (L.). Aquaculture, 440: 48–59. DOI: 10.1016/j.aquaculture.2015.01.029

Zhang, L., L. Li, X. Guo, G.W. Litman, L.J. Dishaw & G. Zhang. 2015. Massive expansion and functional divergence of innate immune genes in a protostome. Scientific Reports, 5: 8693. DOI: 10.1038/srep08693

Zhang, P., Haidvogel, D., Powell, E., Klinck, J., Mann, R., Castruccio, F., Munroe, D. 2015. A coupled physical and biological model of larval connectivity in Atlantic surfclams along the Middle Atlantic Bight. Part I: Model development and description. Estuarine, Coastal and Shelf Sci. 153: 38-53. DOI: 10.1016/j.ecss.2014.11.033

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Able, K. W., T. M. Grothues, J. M. Morson and K. E. Coleman. 2014. Temporal variation in winter flounder recruitment at the southern margin of their range: is the decline due to increasing temperatures? ICES J. Mar. Sci. DOI: 10.1093/icesjms/fsu094

Bricelj, V. M., A.D. Cembella, D.E. Laby, 2014. Temperature effects on kinetics of paralytic shellfish toxin elimination in Atlantic surfclams, Spisula solidissima. Deep Sea Research Part II - Special Issue: Harmful Algae in the Gulf of Maine: Oceanography, Population Dynamics, and Toxin Transfer in the Food Web 103: 308-317. DOI: 10.1016/j.dsr2.2013.05.014

Burge, C.A., C.M.,Eakin, C.S. Friedman, B. Froelich, P.K. Hershberger, E.E. Hofmann, L.E. Petes, K.C. Prager, E. Weil, B.L. Willis, S.E. Ford and C.D. Harvell. 2014. Climate Change Influences on Marine Infectious Diseases: Implications for Management and Society. Ann. Rev. Marine Science. Vol. 6, 249-277. DOI: 10.1146/annurev-marine-010213-135029

Bushek, D. and R. Carnegie.2014. Harmonizing East Coast Shellfish Health Regulations. ECSGA Newsletter, Issue 3 October 2014.

Carnegie, RB, D. Bushek, L.R. Calvo, K.L. Hudson, L.L. Gustafson and L.H. Creekmore. 2014. East Coast Regional Molluscan Aquaculture Health Management Workshop: Meeting Summary. October 6, 2014. 2 pp. DOI: 10.13140/RG.2.1.4061.2004

Fellous, A., P. Favrel, X. Guo and G. Riviere. 2014. The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthalogues in the oyster gametogenesis and development. Gene. DOI: 10.1016/j.gene.2013.12.016

Munroe, Daphne, John M. Klinck, Eileen E. Hofmann and Eric N. Powell. 2014. A modelling study of the role of marine protected areas in metapopulation genetic connectivity in Delaware Bay oysters. Aquatic Conserv: Mar. Freshw. Ecosyst. 24: 645–666. DOI: 10.1002/aqc.2400

Paillard C., F. Jean, S.E. Ford, E.N. Powell, J.M. Klinck, E.E. Hofmann, J. Flye-Sainte-Marie. 2014. A Theoretical individual-based model of Brown Ring Disease In Manila clams, Venerupes philippinarum. J. Sea Research 9:15-34. DOI: 10.1016/j.seares.2014.03.005

Yang, H., Y. Wang, X. Guo and T.R. Tiersch. 2014. Production of inbred larvae through self-fertilization using oocytes and cryopreserved sperm from the same individuals after sex reversal in eastern oyster Crassostrea virginica. Aquaculture Res. DOI: 10.1111/are.12371

Wang, X., Li, Q., Lian, J., Li, L., Jin, L., Cai, H., Xu, F., Qi, H., Zhang, L., Wu, F., Meng, J., Que, H., Fang, X., Guo, X. and Zhang, G. 2014. Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation. BMC Genomics 15:1119. DOI: 10.1186/1471-2164-15-1119

Zhang, L., L. Li, Y. Zhu, G. Zhang and X. Guo. 2014. Transcriptome analysis reveals a rich gene set related to innate immunity in the eastern oyster (Crassostrea virginica). Marine Biotechnol., 16:17-33. DOI: 10.1007/s10126-013-9526-z

Zhang, N., F Xu and X. Guo. 2014. Genomic Analysis of the Pacific Oyster (Crassostrea gigas) Reveals Possible Conservation of Vertebrate Sex Determination in a Mollusc. G3: Genes, Genomes, Genetics. DOI: 10.1534/g3.114.013904

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Ashton-Alcox, K.A., E.N. Powell, J.A. Hearon, C.S. Tomlin, R.M. Babb. 2013. Transplant monitoring for the New Jersey Delaware Bay Oyster Fishery. Journal of Shellfish Research, 32(2):459-469. DOI: 10.2983/035.032.0226

Bao, Y., Q. Wang, X. Guo and Z. Lin. 2013. Structure and immune expression analysis of hemoglobin genes from the blood clam Tegillarca granosa. Genetics and Molecular Research, 12(3):3110-23. DOI: 10.4238/2013.February.28.5

Ben-Horin, T., H.S. Lenihan and K.D. Lafferty. 2013. Variable intertidal temperature explains why disease endangers black abalone. Ecology 94: 161-168. DOI: 10.1890/11-2257.1

Calvo, L.M., J. Kraeuter, G. Flimlin, J. Myers. 2013. New Jersey Shellfish Aquaculture Situation & Outlook Report. 2012 Shellfish Aquaculure Survey Results. 9p.

Carnegie, R and D Bushek. 2013. Bonamia exitiosa and its infection of Crassostrea virginica in the eastern USA: An advisory. 2 pp.

Guevelou, E., A. Huvet, R. Sussarellu, M. Milan, X. Guo, L. Li, G. Zhang, V. Quillien, J.-Y. Daniel, C. Quere, P. Boudry and C. Corporeau. 2013. Regulation of a truncated isoform of AMP-activated protein kinase alpha (AMPK alpha) in response to hypoxia in the muscle of Pacific oyster Crassostrea gigas. J. Comparative Physiology B 183:597-611. DOI: 10.1007/s00360-013-0743-6

Iacchei, M., T. Ben-Horin, K.A. Selkoe, C.E. Bird, F.J. Garcia-Rodrigues and R.J. Toonen. 2013. Combined analyses of kinship and FST suggest potential drivers of chaotic genetic patchiness in high gene flow populations. Molecular Ecology. 22: 3476-3494. DOI: 10.1111/mec.12341

Lafferty, K.D. and T. Ben-Horin. 2013. Abalone farm discharges the withering syndrome pathogen into the wild. Frontiers in Microbiology. 4: 373. DOI: 10.3389/fmicb.2013.00373

Mordecai, E.A., K.P. Paaijmans, L.R. Johnson, C. Balzer, T. Ben-Horin, E. de Moor, A. McNally, S. Pawar, T. Smith and K.D. Lafferty. 2013. Optimal temperature for malaria transmission is dramatically lower than previously predicted. Ecology Letters 16: 22-30. DOI: 10.1111/ele.12015

Munroe, D., J. Klinck, E. Hofmann and E.N. Powell. 2013. How do shellfisheries influence genetic connectivity in metapopulations? A modeling study examining the role of lower size limits in oyster fisheries. Canadian Journal of Fisheries and Aquatic Sciences, 70(12): 1813-1828. DOI: 10.1139/cjfas-2013-0089

Munroe, D.M., E.N. Powell, R. Mann, J.M. Klinck and E.E. Hofmann. 2013. Underestimation of primary productivity on continental shelves: evidence from maximum size of extant surfclam (Spisula solidissima) populations. Fisheries Oceanography, 22: 220–233. DOI: 10.1111/fog.12016

Munroe, D., A. Tabatabai, I. Burt, D. Bushek, E. N.Powell & J. Wilkin. 2013. Oyster mortality in Delaware Bay: Impacts and recovery from Hurricane Irene and Tropical Storm Lee. Estuarine, Coastal and Shelf Science. 135:209-219. DOI: 10.1016/j.ecss.2013.10.011

Powell, E. N. and K. A. Ashton-Alcox. 2013. Is overwinter mortality commonplace in Delaware Bay oyster populations? The ambiguity of dredge efficiency. Journal of Shellfish Research, 32(3):639-645. DOI: 10.2983/035.032.0303

Rolton, A., J. Vignier, Julien, P. Soudant, S. Shumway, V.M. Bricelj, A. Volety, 2014. Impacts of the red tide organism, Karenia brevis, on the early life stages of oysters Crassostrea virginica and clams Mercenaria mercenaria. Aquatic Toxicology 155: 199-206. DOI: 10.1016/j.aquatox.2014.06.023

Wang, H., L. Qian, A. Wang and X. Guo. 2013. Occurrence and distribution of Crassostrea sikamea (Amemiya 1928) in China. Journal of Shellfish Research, 32(2):439-446. DOI: 10.2983/035.032.0224

Yang, H., J. Supan, X. Guo and T.R. Tiersch. 2013. Nonlethal sperm collection and cryopreservation in the eastern oyster Crassostrea virginica. Journal of Shellfish Research, 32(2):429-437. DOI: 10.2983/035.032.0223

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Bushek, D., S.E. Ford and I. Burt. 2012.  Long-term patterns of an estuarine pathogen along a salinity gradient. J. Mar. Res. 70:225-251. DOI: 10.1357/002224012802851968

Bochenek, E.A., E.N. Powell and J. DePersenaire. 2012. Recall bias in recreational summer flounder party boat trips and angler preferences to new approaches to bag and size limits. Fish. Sci. 78:1-14. DOI: 10.1007/s12562-011-0413-0

Bricelj, V.M., Haubois A.-G., M. Sengco, R.H. Pierce, J. Culter, D. M. Anderson, 2012. Trophic transfer of brevetoxins to the benthic macrofaunal community during a bloom of the harmful dinoflagellate Karenia brevis in Sarasota Bay, Florida. Harmful Algae 16: 27–34. DOI: 10.1016/j.hal.2012.01.001

Ford, S.E. and D. Bushek. 2012. Development of resistance to an introduced marine pathogen by a native host. J. Mar. Res. 70:205-223. DOI: 10.1357/002224012802851922

Ford, S.E., E. Scarpa, D. Bushek. 2012. Spatial and temporal variability of disease refuges in an estuary: Implications for the development of resistance. J. Mar. Res. 70:253-277. DOI: 10.1357/002224012802851850

He, Y. 2012. Identification and Application of Disease-resistance Markers in the Eastern Oyster (Crassotrea virginica). Ph.D. Dissertation, Ocean University of China, Qingdao. 140pp. (Abstract)

He, Y. S. Ford, D. Bushek, E. Powell, Z. Bao and X. Guo. 2012. Effective population sizes of eastern oyster Crassostrea virginica (Gmelin) populations in Delaware Bay, USA. J. Mar. Res. 70:357-379. DOI: 10.1357/002224012802851977

He, Y., H. Yu, Z. Bao, Q. Zhang and X. Guo. 2012. Mutation in promoter region of a serine protease inhibitor confers Perkinsus marinus resistance in the eastern oyster (Crassostrea virginica). Fish & Shellfish Immunol. 33: 411-417. DOI: 10.1016/j.fsi.2012.05.028

Hofmann, E.E. and S.E. Ford. 2012. An introduction to Ecology of Infectious Diseases – Oysters and Estuaries. J. Mar. Res. 70:i-viii. DOI: 10.1357/002224012802851959

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Morson, J. M., E. A. Bochenek, E. N. Powell and J. E. Gius. 2012. Sex-at-length of summer flounder (Paralichthys dentatus) landed in the party boat sector of the recreational fishery of New Jersey. N. Am. J. Fish. Mgmt. 32: 1201-1210. DOI: 10.1080/02755947.2012.728174

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Narváez, D. A., John M. Klinck, Eric N. Powell, Eileen E. Homann, John Wilkin and Dale B. Haidvogel. 2012. Circulation and behavior controls on dispersal of Eastern oyster (Crassostrea virginica) larvae in Delaware Bay. J. Mar. Res. 70: 411-440. DOI: 10.1357/002224012802851913

Narváez, D. A., John M. Klinck, Eric N. Powell, Eileen E. Homann, John Wilkin and Dale B. Haidvogel. 2012. Modeling the dispersal of Eastern oyster (Crassostera virginica) larvae in Delaware Bay. J. Mar. Res. 70:381-409. DOI: 10.1357/002224012802851940

Powell, E. N., D. A. Kreeger, J. M. Morson, D. B. Haidvogel, Z. Wang, R. Thomas and J. E. Gius. 2012. Oyster food supply in Delaware Bay: estimation from a hydrodynamic model and interaction with the oyster population. J. Mar. Res. 70: 469-503. DOI: 10.1357/002224012802851904

Powell, E. N., J. M. Klinck, K. A. Ashton-Alcox, E. E. Hoffmann and J. M. Morson. 2012. The rise and fall of Crassostrea virginica oyster reefs: the role of disease and fishing in their demise and a vignette on their recovery. J. Mar. Res. 70: 505-558. DOI: 10.1357/002224012802851878

Powell, E. N., J. M. Morson, K. A. Ashton-Alcox and Y. Kim. 2012. Accommodation of the sex ratio in eastern oysters to variation in growth and mortality across the estuarine salinity gradient in Delaware Bay. J. Mar. Biol. Assoc. U.K. DOI: 10.1017/S0025315412000215

Powell, E.N., J.M.Klinck, X. Guo, E.E.Hofmann, S.E.Ford, D. Bushek. 2012. Can oysters Crassostrea virginica develop resistance to Dermo Disease in the field: The impediment posed by climate change. J. Mar. Res. 70:309-355. DOI: 10.1357/002224012802851896

Powell, E. N., X. Hu, W-J. Cai, K. A. Ashton-Alcox, K. M. Parsons-Hubbard and S. E. Walker. 2012. Geochemical controls on carbonate shell taphonomy in northern Gulf of Mexico continental shelf and slope sediments. Palaios, 27: 8, 571-584. DOI: 10.2110/palo.2011.p11-116r

Soniat, T.M., J.M. Klinck, E.N. Powell and E.E. Hofmann. 2012. Understanding the success and failure of oyster populations: periodicities of Perkinsus marinus and oyster recruitment, mortality, and size. Journal of Shellfish Research, 31:635-646. DOI: 10.2983/035.031.0307

Wang, Z., D. Haidvogel, D. Bushek, S. Ford, E. Hoffman, E. Powell and J. Wilkins. 2012. Circulation and water properties and their relationship to the oyster disease, MSX, in Delaware Bay. J. Mar. Res. 70:279-308. DOI: 10.1357/002224012802851931

Wilbur, A., J. Gauthier, S. Ford and M. Gomez-Chiarri. 2012. Use of a quantitative PCR assay to determine prevalence and intensity of MSX (Haplosporidium nelsoni) in North Carolina and Rhode Island oysters (Crassostrea virginica). Dis. Aquat. Org. 102:107-118. DOI: 10.3354/dao02540

Whalen, L., D. Kreeger, D. Bushek and J. Moody. 2012. Strategic Planning for Living Shorelines in the Delaware Estuary. Wetlands Newsletter, 34(6):14-19.

Yang, H., E. Hu, R. Cuevas-Uribe, J. Supan, X. Guo, T.R. Tiersch. 2012. High-throughput sperm cryopreservation of eastern oyster Crassostrea virginica. Aquaculture, 344-349: 223-230. DOI: 10.1016/j.aquaculture.2012.03.018

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Able, K.A., T. M. Grothues, E. A. Bochenek and M. Yergey. 2011. Discard mortality in the summer flounder fishery: a new approach to evaluation. Final Report to the Mid-Atlantic Research Set-Aside Program. 42p.

Beck, M.W., R.D. Brumbaugh, L. Airoldi, A. Carranza, L.D. Coen, C. Crawford, O. Defeo, G.J. Edgar, B. Hancock, M.C. Kay, H.S. Lenihan, M.W. Luckenbach, C.L. Toropova, G. Zhang and X. Guo. 2011. Oyster reefs at risk and recommendations for conservation, restoration, and management. BioScience, 61(2):107-116. DOI: 10.1525/bio.2011.61.2.5

Brett, C.E., K.M. Parsons-Hubbard, S.E. Walker, C. Ferguson, E.N. Powell, G. Staff, K.A. Ashton-Alcox and A. Raymond. 2011. Gradients and patterns of sclerobionts on experimentally deployed bivalve shells: synopsis of bathymetric and temporal trends on a decadal time scale. Palaeogeogr. Palaeoclimatol. Palaeoecol. 312:278-304. DOI: 10.1016/j.palaeo.2011.05.019

Bricelj, V.M., S.E. Ford, C. Lambert, A. Barbou, C. Paillard. 2011. Effects of toxic Alexandrium tamarense on behavior, hemocyte response and development of brown ring disease in the Manila clam, Ruditapes phillipinarum. Mar. Ecol. Prog. Ser. 430:35-48. DOI: 10.3354/meps09111

Bushek, D. 2011. Delaware Bay New Jersey Oyster Seedbed Monitoring Program: 2010 Status Report. Haskin Shellfish Research Laboratory. Rutgers, The State University of New Jersey. February 4, 2011. 28 pp.

Bushek, D. 2011. Shellfish being used to monitor Delaware Bay, other estuaries. Estuary News, 21(4):7.

Carson, H.S., Cook G.S., López-Duarte P.C., Levin L.A. 2011. Evaluating the importance of demographic connectivity in a marine metapopulation. Ecology 92(10): 1972-1984. DOI: 10.1890/11-0488.1

Elston, R.A. and S.E. Ford. Shellfish Diseases and Health Management. 2011. Ch. 13 In "Shellfish Aquaculture and the Environment", S. Shumway, Editor. Wiley-Blackwell, 359-394. DOI: 10.1002/9780470960967.ch13

Ford, S. E. 2011. Roseovarius Oyster Disease (ROD) caused by Roseovarius crassostreae. ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 57. 4 pp.

Ford, S.E., J. Paterno, E. Scarpa, N.A. Stokes, Y. Kim, E.N. Powell and D. Bushek. 2011. Widespread survey finds no evidence of Haplosporidium nelsoni (MSX) in Gulf of Mexico oysters. Diseases of Aquatic Organisms. 93: 251–256. DOI: 10.3354/dao02306

Guo, L., L. Li, S. Zhang. X. Guo and G. Zhang. 2011. Novel polymorphisms in the myostatin gene and their association with growth traits in a variety of bay scallop, Argopecten irradians. Animal Genetics, 42: 339-340. DOI: 10.1111/j.1365-2052.2011.02172.x

Heise, E.A., A. Raymond, K. Parsons-Hubbard, S.E. Walker, G. Staff, E. Powell, C. Brett, K.A. Ashton-Alcox. 2011. Wood taphonomy in a tropical marine carbonate environment: experimental results from Lee Stocking Island, Bahamas. Palaeogeogr. Palaeoclimatol. Palaeoecol. 312:363-379. DOI: 10.1016/j.palaeo.2011.04.031

ICES. 2011. Dermo disease of oysters caused by Perkinsus marinus. Revised and updated by Susan E. Ford. ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 30. 5 pp.

ICES. 2010. MSX disease of oysters caused by Haplosporidium nelsoni. Revised and updated by Susan E. Ford. ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 38. 4 pp.

ICES. 2011. SSO Disease of Oysters Caused by Haplosporidium costale. Revised and updated by Susan E. Ford. ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 39. 4 pp.

Kraeuter, J.N., S.E. Ford, D. Bushek, E. Scarpa, W.C. Walton, D.C. Murphy, G. Flimlin and G. Mathis. 2011. Evaluation of three northern quahog (Hard Clam) Mercenaria mercenaria (Linnaeus) strains grown in Massachusetts and New Jersey for QPX-resistance. Journal of Shellfish Research, 30(3):805-812. DOI: 10.2983/035.030.0321

López-Duarte, P.C., J.H. Christy and R.A. Tankersley. 2011. A behavioral mechanisms for dispersal in fiddler crab larvae (genus Uca) varies with adult habitat, not phylogeny. Limnol Oceanogr: 56(5): 1979-1892. DOI: 10.4319/lo.2011.56.5.1879

Powell, E.N., E.A. Bochenek, J. DePersenaire and S.E. King. 2011. Injury frequency for discarded summer flounder in the recreational fishery of the Mid-Atlantic Bight: influence of landing size regulations. Am. Fish. Soc. Symp. 75:171-187.

Powell, E.N., C.E. Brett, K.M. Parsons-Hubbard, W.R. Callender, G.M. Staff, S.E. Walker, A. Raymond and K.A. Ashton-Alcox. 2011. The relationship of bionts and taphonomic processes in molluscan taphofacies formation on the continental shelf and slope: eight-year trends: Gulf of Mexico and Bahamas. Facies 57:15-37. DOI: 10.1007/s10347-010-0235-z

Powell, E.N., J.M. Klinck and E.E. Hofmann. 2011. Generation time and the stability of sex-determining alleles in oyster populations as deduced using a gene-based population dynamics model. J. Theor. Biol. 271:27-43. DOI: 10.1016/j.jtbi.2010.11.006

Powell, E.N., J.M. Klinck, X. Guo, S.E. Ford and David Bushek. 2011. The Potential for Oysters, Crassostrea virginica, to Develop Resistance to Dermo Disease in the Field: Evaluation using a Gene-Based Population Dynamics Model. Journal of Shellfish Research, 30(3):685-712. DOI: 10.2983/035.030.0310

Powell, E.N., J. M. Morson and J.M. Klinck. 2011. Application of a gene-based population dynamics model to the optimal egg size problem: why do bivalve planktotrophic eggs vary in size? Journal of Shellfish Research, 30:403-423. DOI: 10.2983/035.030.0228

Powell, E.N., G.M. Staff, W.R. Callender, K.A. Ashton-Alcox, C.E. Brett, K.M. Parsons-Hubbard, S.E. Walker and A. Raymond. 2011 Taphonomic degradation of molluscan remains during thirteen years on the continental shelf and slope of the northwestern Gulf of Mexico. Palaeogeogr. Palaeoclimatol. Palaeoecol. 312:209-232. DOI: 10.1016/j.palaeo.2010.12.006

Powell, E.N., G.M. Staff, W.R. Callender, K.A. Ashton-Alcox, C.E. Brett, K.M. Parsons-Hubbard, S.E. Walker and A. Raymond. 2011. The influence of molluscan taxon on taphofacies development over a broad range of environments of preservation: the SSETI experience. Palaeogeogr. Palaeoclimatol. Palaeoecol. 312:233-264. DOI: 10.1016/j.palaeo.2011.01.008

Walker, S.E., K. Parsons-Hubbard, S. Richardson-White, C. Brett and E. Powell. 2011. Alpha and beta diversity of encrusting foraminifera that recruit to long-term experiments along a carbonate platform-to-slope gradient: paleoecological and paleoenvironmental implications. Palaeogeogr. Palaeoclimatol. Palaeoecol. 312:325-349. DOI: 10.1016/j.palaeo.2011.04.028

Wang, A., Y. Wang, Z. Gu, S. Li, Y. Shi and X. Guo. 2011. Development of expressed sequence tags from the pearl oyster, Pinctada martensii Dunker. Marine Biotechnology, 13(2):275-283. DOI: 10.1007/s10126-010-9296-9

Whalen, L., D. Bushek, D. Kreeger and J. Moody. 2011. Bivalve bolstering the marsh: an update on the Delaware Estuary Living Shoreline Initiative. Estuary News, 21(4):10.

Yu, H., Y. He, X. Wang, Q. Zhang, Z. Bao and X. Guo. 2011. Polymorphism in a serine protease inhibitor gene and its association with disease resistance in the eastern oyster (Crassostrea virginica Gmelin). Fish and Shellfish Immunology, 30:757-762. DOI: 10.1016/j.fsi.2010.12.015

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Ashton-Alcox, K. A. 2010. Bang for the Buck: Shell Planting in Delaware Bay. Estuary News, 20:2, p.5-7.

Bushek, D. and Kreeger, K. 2010. Scientists flex mussels to protect shorelines. Estuary News, 20(2):6-7.

Bochenek, E.A., E.N. Powell and J. DePersenaire. 2010. Evaluating catch, effort, and bag limits on summer flounder directed trips in the recreational summer flounder party boat fishery. Marine and Coastal Fisheries 2(1):412 - 423. DOI: 10.1577/C09-050.1

Hofmann, E. 2010. Researchers seeking to tame oyster disease in Delaware Bay. Combating tidal marsh erosion with ‘living shorelines’. Estuary News, 20(2):9-10.

Marzec, R.J., Y. Kim and E.N. Powell. 2010. Geographic trends in weight and condition index of surfclams (Spisula solidissima) in the Mid-Atlantic Bight. Journal of Shellfish Research, 29:117-128. DOI: 10.2983/035.029.0104

Munroe, D.M., Noda, T. and Ikeda, T. 2010. Shore Level Differences in Barnacle (Chthamalus dalli) Recruitment Relative to Rock Surface Topography. Journal of Experimental Marine Biology and Ecology 392: 188-192. DOI: 10.1016/j.jembe.2010.04.019

Powell, E.N., E.A. Bochenek and J. DePersenaire. 2010. Evaluation of bag-and-size-limit options in the management of summer flounder Paralichthys dentatus. Fisheries Research 105:215-227. DOI: 10.1016/j.fishres.2010.05.011

Wang, S., E. Peatman, H.Liu, D. Bushek, S.E. Ford, H. Kucuktas, J. Quilang, P. Li, R. Wallace, Y. Wang, X. Guo and Z. Liu. 2010. Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge. Fish Shellfish Immunol. 29: 921-929. DOI: 10.1016/j.fsi.2010.07.035

Wang, Y., A. Wang and X. Guo. 2010. Development and characterization of polymorphic microsatellite markers for the northern quahog Mercenaria mercenaria (Linnaeus, 1758. Journal of Shellfish Research, 29(1):77-88. DOI: 10.2983/035.029.0130

Wang, Y., X. Wang, A. Wang and X. Guo. 2010. A 16-microsatellite multiplex assay for parentage assignment in the eastern oyster (Crassostrea virginica). Aquaculture 308:S28-S33. DOI: 10.1016/j.aquaculture.2010.05.037

Xiao, J., J.F. Cordes, H. Wang, X. Guo and K.S. Reece. 2010. Population genetics of Crassostrea ariakensis in Asia inferred from microsatellite markers. Marine Biology 157:1767-1781. DOI: 10.1007/s00227-010-1449-x

Zhang, L. and X. Guo. 2010. Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing. Aquaculture 302:124-129. DOI: 10.1016/j.aquaculture.2010.02.012

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Bochenek, E.A. 2009. Barnegat Bay Watershed Education & Fishing Program. Final Report to the Barnegat Bay National Estuary Program, 2008 Public Participation & Education Mini-grant Program.

Ford, S.E., B. Allam and Z. Xu. 2009. Using bivalves as particle collectors and PCR detection to investigate the environmental distribution of Haplosporidium nelsoni. Dis. Aquat. Org. 83:159-168. DOI: 10.3354/dao02018

Ford, S., N. Stokes, E. Burreson, E. Scarpa, R. Carnegie, J. Kraeuter, D. Bushek. 2009 Minchinia mercenariae n. sp. (Haplosporidia) in the Hard Clam Mercenaria mercenaria: Implications of a Rare Parasite in a Commercially Important Host. J. Eukaryotic Microbiology 56:542-551. DOI: 10.1111/j.1550-7408.2009.00432.x

Gray, B.R., D. Bushek, J.W. Drane and D. Porter. 2009. Associations between land use and Perkinsus marinus infection of eastern oysters in a high salinity, partially urbanized estuary. Ecotoxicology 18:259-269. DOI: 10.1007/s10646-008-0279-9

Guo, X. 2009. Use and exchange of genetic resources in molluscan aquaculture. Reviews in Aquaculture 1:251-259. DOI: 10.1111/j.1753-5131.2009.01014.x

Hanan, Doyle A., R.B. Stone and E.A. Bochenek. 2009. Improving the Accuracy of Length and Weight Information for the Angling Category Atlantic Bluefin Tuna Fishery. Final Report submitted to the Cooperative Research Partner’s Program, National Marine Fisheries Service. Contract NO. NFFM5100-6-00610

Hofmann, E., D. Bushek, S. Ford, X. Guo, D. Haidvogel, D. Hedgecock, J. Klinck, C. Milbury, D. A. Narváez, E. Powell, Y. Wang, Z. Wang, J. Wilkin and L. Zhang. 2009. Understanding how disease and environment combine to structure resistance in estuarine bivalve populations. Oceanography. 22:212-231. DOI: 10.5670/oceanog.2009.110

Kim, Y. and E.N. Powell. 2009. Effects of climate variability on interannual variation in parasites, pathologies, and physiological attributes of bivalves from the U.S. East, Gulf, and West coasts. Environmental Bioindicators 4:67-96. DOI: 10.1080/15555270802708830

King, S.E., E.N. Powell and E.A. Bochenek. 2009. Effect of an increase in codend mesh size on discarding in the Loligo squid-directed fishery: a commercial-scale test. Journal of Northwest Atlantic Fisheries Science. 40:41-58.

Kraeuter, J.N. 2009. Scaphopoda (Mollusca) of the Gulf of Mexico. Ch 36 In: Felder, D.L. and D.K. Camp (eds) Gulf of Mexico Origin, Waters, and Biota. Volume 1, Biodiversity. Texas A & M University Press, pp. 745-749.

Kraeuter, J.N., G. Flimlin, M.J. Kennish, R. Macaluso and J. Viggiano. 2009. Sustainability of northern quahogs (= hard clams) Mercenaria mercenaria, Linnaeus in Raritan Bay, New Jersey: Assessment of size-specific growth and mortality. Journal of Shellfish Research, 28: 419-424. DOI: 10.2983/035.028.0209

Kucuktas, H., S. Wang, P. Li, C. He, P. Xu, Z. Sha, H. Liu, Y. Jiang, P. Baoprasertkul, B. Somridhivej, Y. Wang, J. Abernathy, X. Guo, L. Liu, W. Muir and Z. Liu. 2009. Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers. Genetics 181: 1649-1660. DOI: 10.1534/genetics.108.098855

Liu, X., F. Wu, H. Zhao, G. Zhang and X. Guo. 2009. A novel shell color variant of the Pacific abalone Haliotis discus hannai Ino subject to genetic control and dietary influence. Journal of Shellfish Research, 28:419-424. DOI: 10.2983/035.028.0226

Powell, E.N., J.M. Klinck, K.A. Ashton-Alcox, J.N. Kraeuter. 2009. Multiple stable reference points in oyster populations: biological relationships for the eastern oyster (Crassostrea virginica) in Delaware Bay. Fishery Bulletin 107:109-132.

Powell, E.N., J.M. Klinck, K.A. Ashton-Alcox, J.N. Kraeuter. 2009. Multiple stable reference points in oyster populations: implications for reference point-based management. Fishery Bulletin 107:133-147.

Ren, J., X. Liu, G. Zhang, B. Liu and X. Guo. 2009. "Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes. BMC Genomics 10:84, 6p. DOI: 10.1186/1471-2164-10-84

Shi, Y., H. Kui, X. Guo, Z. Gu, Y. Wang and A. Wang. 2009. Genetic linkage map of the pearl oyster, Pinctada martensii (Dunker). Aqua. Res. 41:35-44. DOI: 10.1111/j.1365-2109.2009.02299.x

Shi, Y., Y. Wang, K. Hong, Z. Hou, A. Wang and X. Guo. 2009. Characterization of 31 EST-derived microsatellite markers for the pearl oyster Pinctada martensii (Dunker). Mol. Ecol. Res. 9:177-179. DOI: 10.1111/j.1755-0998.2008.02424.x

Soniat, T.M., E.E. Hofmann, J.M. Klinck and E.N. Powell. 2009. Differential modulation of eastern oyster (Crassostrea virginica) disease parasites by the El Niño-Southern Oscillation and the Northern Atlantic Oscillation. Int. J. Earth Sci. 98:99-114. DOI: 10.1007/s00531-008-0364-6

Wang, Y., Y. Shi and X. Guo. 2009. Identification and characterization of 66 EST-SSR markers in the eastern oyster Crassostrea virginica (Gmelin). Journal of Shellfish Research, 28(2):227-234. DOI: 10.2983/035.028.0204

Wang, L., L. Song, J. Zhao, L. Qiu, H. Zhang, W. Xu, H. Li, C. Li, L. Wu and X. Guo. Expressed sequence tags from the zhikong scallop (Chlamys farreri): Discovery and annotation of host-defense genes. Fish & Shellfish Immunology 26: 744-750. DOI: 10.1016/j.fsi.2009.03.002

Wang, Y., A. Wang and X. Guo. 2009. Development and characterization of 30 polymorphic microsatellite markers for the Atlantic surfclam, Spisula solidissima (Dillwyn, 1817). Mol. Ecol. Res., 9(4):1264-1267. DOI: 10.1111/j.1755-0998.2009.02660.x

Xu, F., G. Zhang, X. Liu, S. Zhang, B. Shi and X. Guo. 2009. Laboratory hybridization between Crassostrea ariakensis and C. sikamea. Journal of Shellfish Research, 28(3):453-458. DOI: 10.2983/035.028.0305

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Boyd, S. 2008. Potential ecological impacts to the Delaware Bay from a non-indigenous isopod. New Jersey Flows 9(1):7.

Bushek, D., S. Ford and E.M. Scarpa. 2008. Some considerations on the use of RFTM, PCR and other assays in monitoring and research of perkinsosis. In: Workshop for the analysis of the impact of perkinsosis to the European shellfish industry. A. Villalba (Ed.), Centro de Investigacions Marinas, Conselleria de Peca e Asuntos Maritimos da Xunta de Galicia, Vilanova de Arousa, Spain, 163 pp.

Bushek, D., A. Kornbluh, H. Wang, X. Guo, G. DeBrosse, J. Quinlan. 2008. Fertilization interference between Crassostrea ariakensis and Crassostrea virginica : a gamete sink? Journal of Shellfish Research, 27(3):593-600. DOI: 10.2983/0730-8000(2008)27[593:FIBCAA]2.0.CO;2

Bushek, D., B. Landau and E. Scarpa. 2008. Perkinsus chesapeaki in stout razor clams Tagelus plebius from Delaware Bay. Diseases of Aquatic Organisms 78:243-247. DOI: 10.3354/dao01871

Diamond, E.A., B.R. de Forges and L.S. Kornicker. 2008. Azygocypridina brynmawria, a new myodocopid ostracod off Landsdowne Bank, New Caledonia (Crustacea: Ostracoda: Myodocopa: Cypridinidae). Proc. Biol. Soc. Wash. 121:354-364. DOI: 10.2988/07-42.1

Evans, T., C. Milbury, X. Guo and D. Bushek. 2008. Using microsatellites to determine if two rivers in the Delaware Bay are supporting disease refugia for the Eastern oyster (Crassostrea virginica). Journal of Shellfish Research, 27(4):1007.

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Ford, S.E., V.M. Bricelj, C. Lambert and C. Paillard. 2008. Deleterious effects of a non-PST bioactive compound(s) of Alexandrium tamarense on bivalve hemocytes. Mar. Biol. 154:241-253. DOI: 10.1007/s00227-008-0917-z

Ford, S., N. Stokes, E. Burreson, E. Scarpa, R. Carnegie, J. Kraeuter, D. Bushek. A novel hard clam parasite: Making sense of a new finding. Invited Publication, C.M. 2008 D.10/International Council for the Exploration of the Sea. Halifax, NS, Canada. 5pp.

Grothues, T.M., B.A. Phelan and E.A. Bochenek. 2008. Telemetry of spawning winter flounder, Pseudopleuronectes americanus, in a New Jersey estuary. Final Report to the I Boat New Jersey Grant Program of the New Jersey Department of Transportation Office of Maritime Resources. 28p.

Guo, X., Y. Wang, G. DeBrosse, D. Bushek and S. Ford. 2008. Building a superior oyster for aquaculture. The Jersey Shoreline. 25(1):7-9.

Guo, X., Y. Wang, G. DeBrosse, R. Karney, P. Bagnall, J. Blake, S. Ford and D. Bushek. 2008. Superior performance of triploid eastern oyster in the northeastern region. Journal of Shellfish Research, 27(4):952-953.

Guo, X., Y. Wang, L. Wang and J-H Lee. 2008. Oysters. In: Genome Mapping and Genomics in Fishes and Aquatic Animals, Thomas D. Kocher & Chittaranjan Kole (Eds), Springer-Verlag, Berlin. pp.161-175. DOI: 10.1007/978-3-540-73837-4_8

Harding, J.M., S.E. King, E.N. Powell and R. Mann. 2008. Decadal trends in age structure and recruitment patterns of ocean quahogs Arctica islandica from the Mid-Atlantic Bight in relation to water temperatures. Journal of Shellfish Research, 27:667-690. DOI: 10.2983/0730-8000(2008)27[667:DTIASA]2.0.CO;2

Hofmann, E.E., D. Bushek, S.E. Ford, X. Guo, E. Powell, D.B. Haidvogel, J. Wilkin, D. Hedgecock and J.M. Klinck. 2008. Field and modeling studies in support of understanding disease resistance in estuarine populations and responses to climate change. Journal of Shellfish Research, 27(4):1016-1017.

HSRL. 2008. Supplemental Finfish Survey Targeting Mid-Atlantic Migratory Species. March 2007 Cruise Report. Haskin Shellfish Research Laboratory, Rutgers University, 235 pp.

HSRL. 2008. Supplemental Finfish Survey Targeting Mid-Atlantic Migratory Species. May 2007 Cruise Report. Haskin Shellfish Research Laboratory, Rutgers University, 137 pp.

Kim, Y., E.N. Powell, T.L. Wade and B.J. Presley. 2008. Relationship of parasites and pathologies to contaminant body burden in sentinel bivalves: NOAA Status and Trends 'Mussel Watch' Program. Marine Environmental Research 65:101-127. DOI: 10.1016/j.marenvres.2007.09.003

Kraeuter, J.N., J.M. Klinck, E.N. Powell, E.E. Hofmann, S.C. Buckner, R.E. Grizzle and V.M. Bricelj. 2008. Effects of the fishery on the northern quahog (=hard clam, Mercenaria mercenaria L.) population in Great South Bay , New York : A modeling study. Journal of Shellfish Research, 27(4):653-666. DOI: 10.2983/0730-8000(2008)27[653:EOTFOT]2.0.CO;2

Kreeger, D. and D. Bushek. 2008. Combating tidal marsh erosion with 'living shorlines'. Estuary News 19:12-13.

Kreeger, D. and D. Bushek. 2008. From the headwaters to the coast: a watershed-based perspective on bivalve shellfish restoration. Journal of Shellfish Research, 27(4):1022.

Milbury, C.A., X. Guo, D. Bushek and S. Ford. 2008. Spatial population structure in Delaware Bay oysters. Journal of Shellfish Research, 27(4):1033.

Okimoto, T., K. Hara, T. Ishihara and F. Aranishi. 2008. PCR-RFLP genotyping for Japanese and Korean populations of Pacific oyster using mitochondrial DNA noncoding region. Aquatic Ecology 42(1):1-4. DOI: 10.1007/s10452-006-9064-0

Pales Espinoa, E., B. Allam and S.E. Ford. 2008. Particle selection in the ribbed mussel Geukensia demissa and the Eastern oyster Crassostrea virginica: Effect of microalgae growth stage. Estuarine, Coastal and Shelf Science 79:1-6. DOI: 10.1016/j.ecss.2008.02.022

Parsons-Hubbard, K.M., E.N. Powell, A. Raymond, S.E. Walker, C. Brett, K.A. Ashton-Alcox, R.N. Shepard, R. Krause and B. Deline. 2008. The taphonomic signature of a brine seep and the potential for Burgess Shale style preservation. Journal of Shellfish Research, 27:227-239. DOI: 10.2983/0730-8000(2008)27[227:TTSOAB]2.0.CO;2

Powell, E.N ., K.A. Ashton-Alcox, J.N. Kraeuter, S.E. Ford and D. Bushek. 2008. Long-term trends in oyster population dynamics in Delaware Bay: Regime shifts and response to disease. Journal of Shellfish Research, 27:729-755. DOI: 10.2983/0730-8000(2008)27[729:LTIOPD]2.0.CO;2

Powell, E.N ., W.R. Callender, G.M. Staff, K.M Parsons-Hubbard, C.E. Brett, S.E. Walker, A. Raymond and K.A. Ashton-Alcox. 2008. Mollusc shell condition after eight years on the sea floor - taphonomy in the Gulf of Mexico and Bahamas. Journal of Shellfish Research, 27:191-225. DOI: 10.2983/0730-8000(2008)27[191:MSCAEY]2.0.CO;2

Powell, E.N. and J.M. Klinck. 2008. Working Paper: Wavelet analysis of trends in summer flounder YOY and spawner-recruit relationships. Submitted to the Southern Demersal Working Group. 6pp.

Powell, E.N. and J. M. Morson. 2008. Working Paper: Analysis of trends in sex ratio, implications for natural mortality, and variation in age-length keys in summer flounder. Submitted to the Southern Demersal Working Group. 22pp.

Pydeski, J.R. and D. Bushek. 2008. The role of transmission and infection in establishing refugia from two protozoan oyster diseases in Delaware Bay. Journal of Shellfish Research, 27(4):1044.

Richards, G.P., E.J. Crane III and D. Bushek. 2008. Hemolytic strains of Shewanella, Photobacterium and Listonella in Delaware Bay oysters and seawater. Journal of Shellfish Research, 27(4):1047-1048.

Richards, G.P., M.A. Watson, E.J. Crane, I.G. Burt and D. Bushek. 2008. Shewanella and Photobacterium in oysters and seawater from the Delaware Bay . Appl. Env. Micro. 74(11):3323-3327. DOI: 10.1128/AEM.00060-08

Taylor, J. and D. Bushek. 2008. An assessment of habitat value of constructed intertidal oyster reefs and oyster aquaculture systems in Delaware Bay, USA. Journal of Shellfish Research, 27(4):1056.

Taylor, J. and D. Bushek. 2008. Intertidal oyster reefs can persist and function in a temperate North American Atlantic estuary. Mar. Ecol. Prog. Ser. 361:301-306. DOI: 10.3354/meps07429

Taylor, J. and D. Bushek. 2008. Nekton utilization of constructed intertidal oyster reefs and aquaculture structures in Delaware Bay, USA. Journal of Shellfish Research, 27(4):963.

Wang, H., G. Zhang, X. Liu and X. Guo. 2008. Classification of common oysters from North China. Journal of Shellfish Research, 27(3):495-503. DOI: 10.2983/0730-8000(2008)27[495:COCOFN]2.0.CO;2

Wang, H. and X. Guo. 2008. Identification of Crassostrea ariakensis and related oysters by multiplex species-specific PCR. Journal of Shellfish Research, 27(3):481-487. DOI: 10.2983/0730-8000(2008)27[481:IOCAAR]2.0.CO;2

Wang, Y. and X. Guo. 2008. Chromosomal mapping of the major ribosomal RNA genes in the dwarf surfclam (Mulinia lateralis Say). Journal of Shellfish Research, 27:307-311. DOI: 10.2983/0730-8000(2008)27[307:CMOTMR]2.0.CO;2

Wang, Y. and X. Guo. 2008. ITS length polymorphism in oysters and its potential use in species identification. Journal of Shellfish Research, 27(3):489-493. DOI: 10.2983/0730-8000(2008)27[489:ILPIOA]2.0.CO;2

Zhang, L., X. Guo, D. Bushek and S.E. Ford. 2008. Mapping quantitative trait loci conferring Dermo resistance in the eastern oyster Crassostrea virginica. Journal of Shellfish Research, 27(4):1067.

Zheng, H., G. Zhang, X. Guo and X. Liu. 2008. Inbreeding depression from various traits in two cultured populations of the American bay scallop, Argopecten irradians irradians Lamarck (1819) introduced into China. J. Exp. Mar. Biol. Ecol. 364:42-47. DOI: 10.1016/j.jembe.2008.06.027

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Allen, D.M., S.S. Haertel-Borer, B.J. Milan, D. Bushek and R.F. Dame. 2007. Geomorphological determinants of nekton use of intertidal salt marsh creeks. Marine Ecology Progress Series 329:57-71. DOI: 10.3354/meps329057

Bushek, D., M. Heidenreich and D. Porter. 2007. The effects of several common anthropogenic contaminants on proliferation of the parasitic oyster pathogen Perkinsus marinus. Marine Environmental Research 64:535-540. DOI: 10.1016/j.marenvres.2007.03.004

Bushek, D., P.R. Kingsley-Smith, S.K. Allen, Jr., M.J. Bishop, C.J. Kelly, V.S. Kennedy, M.W. Luckenbach, R.I.E. Newell, D.W. Merrit, A. Padeletti, K.P. Paynter, C.H. Peterson and M.N. Tamburri. 2007. Potential direct and indirect interactions between Crassostrea ariakensis and Crassostrea virginica. NOAA Fact Sheet. 2pp.

Coen, L.D., R.D. Brumbaugh, D. Bushek, R. Grizzle, M.W. Luckenbach, M.H. Posey, S.P. Powers and G.S. Tolley. 2007. AS WE SEE IT: Ecosystem services related to oyster restoration. Marine Ecology Progress Series 341:303-307. DOI: 10.3354/meps341303

Flye-Sainte-Marie, J., F. Jean, C. Paillard, S. Ford, E. Powell, E. Hoffman and J. Klinck. 2007. Ecophysiological dynamic model of individual growth of Ruditapes philippinarum. Aquaculture 266:130-143. DOI: 10.1016/j.aquaculture.2007.02.017

Ford S.E. and C. Paillard. 2007. Repeated sampling of individual bivalve mollusks I: intraindividual variability and consequences for haemolymph constituents. Fish and Shellfish Immunology 23:280-291. DOI: 10.1016/j.fsi.2006.10.013

Ford S.E. and R. Smolowitz. 2007. Infection dynamics of an oyster parasite in its newly expanded range. Marine Biology 151:119-133. DOI: 10.1007/s00227-006-0454-6

Guo, X., Y. Wang and Z. Xu. 2007. Genomic analyses using fluorescent in situ hybridization. In:Aquaculture Genome Technologies, Z. Liu (Ed.), Blackwell Publishing, Ames, pp.289-311. DOI: 10.1002/9780470277560.ch17

Jenny, M.J., R.W. Chapman, A. Mancia, Y.A. Chen, D.J. McKillen, H. Trent, P. Lang, J-M Escoubas, E. Bachere, V. Boulo, Z.J. Liu, P.S. Gross, C. Cunningham, P.M. Cupit, A. Tanguy, X. Guo, D. Moraga, I. Boutet, A. Huvet, S.D. Guise, J.S. Almeida and G.W. Warr. 2007. A cDNA microarray for Crassostrea virginica and C. gigas. Marine Biotechnology 9:577-591. DOI: 10.1007/s10126-007-9041-1

Kim, Y. and E.N. Powell. 2007. Distribution of parasites and pathologies in sentinel bivalves: NOAA Status and Trends 'Mussel Watch' Program. Journal of Shellfish Research, 26:1115-1151. DOI: 10.2983/0730-8000(2007)26[1115:DOPAPI]2.0.CO;2

King, S.E. and E.N. Powell. 2007. Influence of adaptive stations in a transect-based sampling design for a multispecies fish survey. Fisheries Research 86:241-261. DOI: 10.1016/j.fishres.2007.06.022

Kraeuter, J.N., S.E. Ford and M.J. Cummings (2007) Growth measurement in oysters: A comparison of methods. Journal of Shellfish Research, 26:479-491. DOI: 10.2983/0730-8000(2007)26[479:OGAACO]2.0.CO;2

Maloy, A.P., S.E. Ford, R. Karney and K.J. Boettcher. 2007. Roseovarius crassostreae, the etiological agent of Juvenile Oyster Disease in Crassostrea virginica. Aquaculture 269:71-83. DOI: 10.1016/j.aquaculture.2007.04.008

Mann, R. and E.N. Powell. 2007. Why oyster restoration goals in the Chesapeake Bay are not and probably cannot be achieved. Journal of Shellfish Research, 26:905-917. DOI: 10.2983/0730-8000(2007)26[905:WORGIT]2.0.CO;2

Polyakov, O., J.N. Kraeuter, E.E. Hofmann, S.C. Buckner, V.M. Bricelj, E.N. Powell and J.M. Klinck. 2007. Benthic predators and northern quahog (=hard clam) (Mercenaria mercenaria Linnaeus, 1758) populations. Journal of Shellfish Research, 26:995-1010. DOI: 10.2983/0730-8000(2007)26[995:BPANQH]2.0.CO;2

Powell, E.N., K.A. Ashton-Alcox and J.N. Kraeuter. 2007. Reevaluation of eastern oyster dredge efficiency in survey mode: Application in stock assessment. North American Journal of Fisheries Management 27:492-511. DOI: 10.1577/M04-205.1

Powell, E.N. and J.M. Klinck. 2007. Is oyster shell a sustainable estuarine resource? Journal of Shellfish Research, 26:181-194. DOI: 10.2983/0730-8000(2007)26[181:IOSASE]2.0.CO;2

Qin. Y., X. Liu, H. Zhang, G. Zhang and X. Guo. 2007. Genetic mapping of size-related quantitative trait loci (QTL) in the bay scallop (Argopecten irradians) using AFLP and microsatellite markers. Aquaculture 272:281-290. DOI: 10.1016/j.aquaculture.2007.07.214

Qin, Y., X. Liu, H. Zhang G. Zhang and X. Guo. 2007. Identification and mapping of AFLP markers linked to shell color in bay scallop, Argopecten irradians (Lamark, 1819). Marine Biotechnology 9:66-73. DOI: 10.1007/s10126-006-6076-7

Quilang, J., S. Wang, P. Li, J. Abernathy, E. Peatman, Y. Wang, L. Wang, Y. Shi, R. Wallace, X. Guo and Z. Liu. 2007. Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers. BMC Genomics 8:(157):1-11. DOI: 10.1186/1471-2164-8-157

Ragone Calvo, L.M., S.E. Ford, J.N. Kraeuter, D.F. Leavitt, R. Smolowitz and E.M. Burreson. 2007. Influence of host genetic origin and geographic location on QPX disease in northern quahogs (=hard clams), Mercenaria mercenaria. Journal of Shellfish Research, 26:109-120. DOI: 10.2983/0730-8000(2007)26[109:IOHGOA]2.0.CO;2

Wang, L., L. Song, H. Zhang, Q. Gao and X. Guo. 2007. Genetic linkage map of bay scallop, Argopecten irradians irradians (Lamark 1819).Aquaculture Research 38:409-419. DOI: 10.1111/j.1365-2109.2007.01683.x

Wang, L., H. Zhang, L. Song and X. Guo. 2007. Loss of allele diversity in introduced populations of the hermaphroditic bay scallop Argopecten irradians. Aquaculture 271:252-259. DOI: 10.1016/j.aquaculture.2007.06.020

Wang, Y. and X. Guo. 2007. Chromosomal mapping of major ribosomal rRNA genes in the hard clam (Mercenaria mercenaria) using flourescence in situ hybridization. Marine Biology 150:1183-1189. DOI: 10.1007/s00227-006-0453-7

Wang, Y. and X. Guo. 2007. Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica. Marine Biotechnology 9:500-511. DOI: 10.1007/s10126-007-9011-7

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Alcivar-Warren, A., D. Meehan-Meola, Y. Wang, X. Guo, L. Zhou, J. Xiang, S. Moss, S. Arce, W. Warren, Z. Xu and K. Bell. 2006. Isolation and mapping of telomeric pentanucleotide (TAACC)n repeats of the Pacific whiteleg shrimp, Penaeus vannamei, using fluorescence in situ hybidization. Marine Biotechnology 8:467-480. DOI: 10.1007/s10126-005-6031-z

Allam, B. and S. E. Ford. 2006. Effects of the pathogenic Vibrio tapetis on defence factors of susceptible and non-susceptible bivalve species : I. Changes in hemocytes following in vitro challenge. Fish and Shellfish Immunology 20:374-383. DOI: 10.1016/j.fsi.2005.05.012

Allam, B., C. Paillard, M. Auffret and S. Ford. 2006. Effects of the pathogenic Vibrio tapetis on defence factors of susceptible and non-susceptible bivalve species : II. Cellular and biochemical changes following in vivo challenge. Fish and Shellfish Immunology 20:384-397. DOI: 10.1016/j.fsi.2005.05.013

Ashton-Alcox, K. A., Y. Kim & E. N. Powell. 2006. Perkinsus marinus assay. In: Histological Techniques for Marine Bivalve Molluscs: Update. NOAA Tech. Mem. NOS NCCOS 27, Silver Spring. pp. 53-64.

Audemard C., L. Ragone Calvo, K.T. Paynter, K.S. Reece and E.M. Burreson. 2006. Real-time PCR investigations of parasite ecology: in situ determination of oyster parasite, Perkinsus marinus, transmission dynamics in lower Chesapeake Bay. Parasitology 132:827-842. DOI: 10.1017/S0031182006009851

Bushek. D. 2006. Protecting horseshoe crab and human health. Estuary News, 16(3):8-9.

Bushek, D. and S. Boyd. 2006. Seasonal Abundance and Occurrance of the Asian Isopod Synidotea laevidorsalis in Delaware Bay, USA. Biological Invasions, 8(4):697-702. DOI: 10.1007/s10530-005-2890-5

Cai, W-J., F. Chen, E.N. Powell, S.E. Walker, K.M. Parsons-Hubbard, G.M. Staff, Y.Wang, K.A. Ashton-Alcox, W.R. Callender and C.E. Brett. 2006. Preferential dissolution of carbonate shells driven by petroleum seep activity in the Gulf of Mexico. Earth and Planetary Science Letters 248:227-243. DOI: 10.1016/j.epsl.2006.05.020

Ellin, R. and D. Bushek. 2006. Adaptation of Ray's fluid thioglycollate medium to detect and quantify planktonic stages of Perkinsus parasites. Journal of Shellfish Research, 25(3):1037-1042. DOI: 10.2983/0730-8000(2006)25[1037:AORFTM]2.0.CO;2

Ford, S.E. and M.M. Chintala. 2006. Northward expansion of a marine parasite: Testing the role of temperature adaptation. Journal of Experimental Marine Biology and Ecology 339:226-235. DOI: 10.1016/j.jembe.2006.08.004

Ford, S.E., M.J. Cummings and E.N. Powell. 2006. Estimating mortality in natural assemblages of oysters. Estuaries and Coasts 29:361-374. DOI: 10.1007/BF02784986

Guo, X. and Y. Luo. 2006. Scallop culture in China. In: S.E. Shumway and G.J. Parsons (Eds.) Scallops: Biology, ecology and aquaculture. Developments in Aquaculture and Fisheries Science 35:1143-1161. DOI: 10.1016/S0167-9309(06)80050-5

Hoffmann, E.E., J.M. Klinck, J.N. Kraeuter, E.N. Powell, R.E. Grizzle, S.C. Buckner and V.M. Bricelj. 2006. A population dynamics model of the hard clam, Mercenaria mercenaria: Development of the age- and length-frequency structure of the population. Journal of Shellfish Research, 25:417-444. DOI: 10.2983/0730-8000(2006)25[417:APDMOT]2.0.CO;2

Kim, Y., K. A. Ashton-Alcox & E. N. Powell. 2006. Gonadal analysis. In: Histological Techniques for Marine Bivalve Molluscs: Update. NOAA Tech. Mem. NOS NCCOS 27, Silver Spring. pp. 1-18.

Kim, Y. and E.N. Powell. 2006. Relationships among parasites and pathologies in sentinel bivalves: NOAA Status and Trends 'Mussel Watch' Program. Bulletin of Marine Science 79:83-111.

Kim, Y., E. N. Powell & K. A. Ashton-Alcox. 2006. Histopathology analysis. In: Histological Techniques for Marine Bivalve Molluscs: Update. NOAA Tech. Mem. NOS NCCOS 27, Silver Spring. pp. 19-52.

Kreeger, D., B. Tudor, J. Sharp, S. Kilham, D. Soeder, M. Maxwell-Doyle, J. Kraeuter, D. Frizzera, J. Hameedi and C. Colllier. 2006. White paper on the status and needs of science in the Delaware estuary. Partnership for the Delaware estuary. 74 pp.

Liu, X., X. Liu, X. Guo, Q. Gao and G. Zhang. 2006. A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino. Marine Biotechnology 8:386-397. DOI: 10.1007/s10126-005-6133-7

Powell, E.N. 2006. Use of commercial vessels in survey augmentation: The size-frequency distribution. Scientia Marina 70:519-544. DOI: 10.3989/scimar.2006.70n3519

Powell, E.N., A.J. Bonner, S.E. King and E.A. Bochenek. 2006. Survey augmentation using commercial vessels in the Mid-Atlantic Bight: Sampling density and relative catchability. Journal of Applied Ichthyolgy 22:471-488. DOI: 10.1111/j.1439-0426.2006.00753.x

Powell, E.N., J.N. Kraeuter and K.A. Ashton-Alcox. 2006. How long does oyster shell last on an oyster reef? Estuarine and Coastal Shelf Science 69:531-542. DOI: 10.1016/j.ecss.2006.05.014

Song, L., W. Xu, C. Li, H. Li, L. Wu, J. Xiang and X. Guo. 2006. Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians. Marine Technology 8:161-169 (Coverpage) DOI: 10.1007/s10126-005-0126-4

Yang, H. and X. Guo. 2006. Polyploid induction by heat shock-induced meiosis and mitosis inhibition in the dwarf surf clam Mulinia lateralis Say. Aquaculture, 252:171-182. DOI: 10.1016/j.aquaculture.2005.07.017

Yang, H. and X. Guo. 2006. Tetraploid induction by inhibiting mitosis I with heat shock, cold shock and nocodazole in the hard clam Mercenaria mercenaria (Linnaeus, 1758). Marine Biotechnology 8:501-510. DOI: 10.1007/s10126-005-6183-x

Yu, Z. and X. Guo. 2006. Identification and mapping of disease-resistance QTL in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture, 254:160-170. DOI: 10.1016/j.aquaculture.2005.10.016

Zheng, H., G. Zhang and X. Guo. 2006. Heterosis between two stocks of the bay scallop, Argopecten irradians irradians Lamark (1819). Journal of Shellfish Research 25:807-812. DOI: 10.2983/0730-8000(2006)25[807:HBTSOT]2.0.CO;2

Zheng, H., G. Zhang, X. Liu and X. Guo. 2006. Sustained response to selection in an introduced population of the hermaphroditic bay scallop Argopecten irradians irradians Lamark (1819). Aquaculture 255:579-585. DOI: 10.1016/j.aquaculture.2005.11.037

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Bochenek, E.A. and Jersey Coast Anglers Association. 2005. A Survey of Two New Jersey Summer Flounder Fishing Tournaments. Final report submitted to Marine Recreational Fisheries Statistics Survey, National Marine Fisheries Service. 90p.

Bochenek, E.A., E.N. Powell, A.J. Bonner and S.E. Banta. 2005. Assessment of scup (Stenotomus chrysops) and black sea bass (Centropristas striata) discards in the directed otter trawl fisheries in the Mid-Atlantic Bight. Fisheries Bulletin, 103:1-14.

Bushek, D., & D. M. Allen. (2005). Motile suspension-feeders in estuarine and marine ecosystems. In R. F. Dame & S. Olenin (Eds.) The Comparative Role of Suspension Feeders in Ecosystems (pp. 53-71). NATO Science Series: IV - Earth and Environmental Sciences, Vol. 47. Dordrecht, The Netherlands: Springer. DOI: 10.1007/1-4020-3030-4_4

Deng, Y., X. Liu, G. Zhang and X. Guo. 2005. Inbreeding depression and maternal effects on early performance of Pacific abalone. North American Journal of Aquaculture, 67:231-236. DOI: 10.1577/A04-021.1

Hedgecock, D. P.M. Gaffney, P. Goulletquer, X. Guo, K. Reece and G. Warr. 2005. A case for sequencing the Pacific oyster genome. Journal of Shellfish Research, 24(2):429-441. DOI: 10.2983/0730-8000(2005)24[429:TCFSTP]2.0.CO;2

HSRL. 2005. Supplemental Finfish Survey Targeting Mid-Atlantic Migratory Species. May 2005 Cruise Report. Haskin Shellfish Research Laboratory, Rutgers University, 137pp.

Kraeuter, J.N. 2005. Cultured aquatic species information program: Mercenaria mercenaria. FAO/FIRI-Inland Water Resources Aquatic Services. United Nations. 6 pp.

Kraeuter, J. N., S.E. Buckner, E.N. Powell. 2005. A note on a spawner-recruit relationship for a heavily exploited bivalve: the case of northern quahogs (hard clams), Mercenaria mercenaria in Great South Bay, New York. Journal of Shellfish Research, 24:1043-1052. DOI: 10.2983/0730-8000(2005)24[1043:ANOASR]2.0.CO;2

Powell, E.N., J.J. Gendek, K.A. Ashton-Alcox. 2005. Fisherman choice and incidental catch: Size frequency of oyster landings in the New Jersey oyster fishery. Journal of Shellfish Research, 24:2, 469-476. DOI: 10.2983/0730-8000(2005)24[469:FCAICS]2.0.CO;2

Toline, C.A., P. Kenny and K. Bushek. 2005. Cement-coated stakes enhance recruitment of damaged oyster reefs (South Carolina). Ecological Restoration, 23(4):277-278. DOI: 10.3368/er.23.4.271

Wang, L., L. Song, Y. Chang, W. Xu, D. Ni and X. Guo. 2005. A preliminary genetic map of zhikong scallop (Chlamys farreri Jones et Preston 1904). Aquaculture Research, 36:643-653. DOI: 10.1111/j.1365-2109.2005.01268.x

Wang, Y., Z. Xu and X. Guo. 2005. Chromosomal mapping of 5S ribosomal RNA genes in the eastern oyster, Crassostrea virginica Gmelin by fluorescence in situ hybridization. Journal of Shellfish Research, 24(4):959-964. DOI: 10.2983/0730-8000(2005)24[959:CMOSRR]2.0.CO;2

Wang, Y., Z. Xu. J.C. Pierce and X. Guo. 2005. Characterization of eastern oyster (Crassostrea virginica Gmelin) chromosomes by fluorescence in situ hybridization with bacteriophage P1 clones. Marine Biotechnology, 7:207-214. DOI: 10.1007/s10126-004-0051-y

Xiao, J., S.E. Ford, H. Yang, G. Zhang, F. Zhang and X. Guo. 2005. Studies on mass summer mortality of cultured zhikong scallops (Chlamys farreri Jones et Preston) in China. Aquaculture, 250:602-615. DOI: 10.1016/j.aquaculture.2005.05.002

Yu, Z. and X. Guo. 2005. Genetic analysis of selected strains of the eastern oyster (Crassostrea virginica Gmelin) using AFLP and microsatellite markers. Marine Biotechnology, 6:575-586. DOI: 10.1007/s10126-004-3600-5

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Bochenek E.A., E.N. Powell and H.A. Diviney. 2004. A Pilot Industry-based Monkfish Gillnet Survey Off The Northeast Coast of the United States. Final project report to Massachusetts Division of Marine Fisheries. 22p.

Burreson, E. M. and S. E. Ford. 2004. A review of recent information on the phylum Haplosporidia, with special reference to Haplosporidium nelsoni (MSX disease). Aquatic Living Resources: 17:499-517. DOI: 10.1051/alr:2004056

Bushek, D., D. Richardson, M.Y. Bobo and L.D. Coen. 2004. Quarantine of Oyster Shell Cultch Reduces the Abundance of Perkinsus marinus. Journal of Shellfish Research, 23(2):369-373.

Bushek, D. and L.D. Coen. 2004. Oyster, Clams, and other Bivalves. In Grolier's The New Book of Knowledge, Danbury, CT, Scholastic Library Publishing, Inc., Vol O, pp 290-291.

Gong, N., H. Yang, G. Zhang, B.J. Landau and X. Guo. 2004. Chromosome inheritance in autotriploid Pacific oyster Crassostrea gigas Thunberg. Heredity, 93:408-415. DOI: 10.1038/sj.hdy.6800517

Guo, X. 2004. Oyster breeding and the use of biotechnology. Bulletin of the Aquaculture Association of Canada, 104:26-33.

Hofmann, E.E., E.N Powell, E.A. Bochenek and J.M. Klinck. 2004. A modeling study of the influence of environment and food supply on survival of Crassostrea gigas larvae. ICES Journal of Marine Science, 61(4):596-616. DOI: 10.1016/j.icesjms.2004.03.029

Kim, Y. and E.N. Powell. 2004. Surf clam histopathology survey along the Delmarva mortality line. Journal of Shellfish Research, 23:429-441.

Lafferty, K.D, J. A. Porter and S. E. Ford. 2004. Are diseases increasing in the ocean? Annual Review of Ecology and Systematics 35:31-54.

Li, L. and X. Guo. 2004. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Marine Biotechnology 6:26-36. DOI: 10.1007/s10126-003-0001-0

Powell, E.N., E.A. Bochenek, J.M. Klinck and E.E. Hofmann, 2004. Influence of short term variations in food on survival of Crassostrea gigas larvae: A modeling study. Journal of Marine Research, 62:117-152. DOI: 10.1357/00222400460744645

Powell, E.N., A.J. Bonner, B. Muller and E.A. Bochenek. 2004. Assessment of the effectiveness of scup bycatch-reduction regulations in the Loligo squid fishery. Journal of Environmental Management, 71:155-167. DOI: 10.1016/j.jenvman.2003.12.016

Powell, E.N., K.A. Ashton-Alcox. 2004. A comparison between a suction dredge and a traditional oyster dredge in the transplantation of oysters in Delaware Bay. Journal of Shellfish Research, 23:3, 803-823.

Shumway, S.E. and J.N. Kraeuter (eds.) 2004. Molluscan Shellfish and Research Management: Charting a Course for the Future. Final Proceedings from the Workshop. Charleston, SC. January 2000. National Oceanic and Atmospheric Administration, U.S. Department of Commerce. 156 pp.

Tanguy, A., X. Guo and S.E. Ford. 2004. Discovery of genes expressed in response to Perkinsus marinus challenge in eastern (Crassostrea virginica) and Pacific (C. gigas) oysters. Gene, 338:121-131. DOI: 10.1016/j.gene.2004.05.019

Wang, H., X. Guo, G. Zhang and F. Zhang. 2004. Classification of jinjiang oysters Crassostrea rivularis (Gould, 1861) from China, based on morphology and phylogenetic analysis. Aquaculture, 242:137-155. DOI: 10.1016/j.aquaculture.2004.09.014

Wang, Y. and X. Guo, 2004. Chromosomal rearrangement in Pectinidae revealed by rRNA loci and implications for bivalve evolution. Biological Bulletin, 207:247-256. DOI: 10.2307/1543213

Wang, Y., Z. Xu and X. Guo. 2004. Differences in the rDNA-bearing chromosome divide the Asian-Pacific and Atlantic species of Crassostrea (Bivalvia, Mollusca). Biological Bulletin, 206:46-54. DOI: 10.2307/1543197

Yang, H. and X. Guo. 2004. Tetraploid induction by meiosis inhibition in the dwarf surfclam Mulinia lateralis: effects of cytochalasin B duration. Aquaculture Research, 35:1187-1194. DOI: 10.1111/j.1365-2109.2004.01118.x

Zheng, H., G. Zhang, X. Liu, F. Zhang and X. Guo. 2004. Different responses to selection in two stocks of the bay scallop, Argopecten irradians irradians Lamarck (1819). Journal of Experimental Marine Biology and Ecology, 313:213-223. DOI: 10.1016/j.jembe.2004.04.015

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Bochenek, E.A. and E.N. Powell. 2003. A Gear Modification Study to Reduce Scup Bycatch. Mid-Atlantic Perspectives (Newsletter of the Mid-Atlantic Fishery Management Council). 6(2): 4-5.

Banta, S.E., E.N. Powell, K.A. Ashton-Alcox. 2003. Evaluation of dredging effort by the Delaware Bay Oyster Fishery in New Jersey waters. N. Amer. J. Fish. Mgmt., 23, 732-741. DOI: 10.1577/M01-074

Bricelj, V.M., J.N. Kraeuter, E.N. Powell, J.M. Klinck, E.E. Hofmann, R.E. Grizzle and S.C. Buckner. 2003. A simulation model of the population growth of hard clams (Mercenaria mercenaria). III. Effects of brown tide. Journal of Shellfish Research, 22:320.

Burger, J., M.H. McDermott, C. Chess, E. Bochenek, M. Perez-Lugo and K.K. Pflugh. 2003. Evaluating risk communication about fish consumption advisories: a brochure versus classroom efficacy in Spanish and English. Risk Analysis, 23(4):791-803. DOI: 10.1111/1539-6924.00356

Fegley, S.R., S.E. Ford, J.N. Kraeuter and H.H. Haskin. 2003. The persistence of New Jersey oyster seedbeds in the presence of MSX disease and harvest: The role of management. Journal of Shellfish Research, 22:451-464.

Flimlin, G.E. Jr, M. Celestino, J.N. Kraeuter, R.J. Macaluso and M. Kennish. 2003. Evaluation of Raritan and Sandy Hook Bay hard clam, Mercenaria mercenaria, stock for fishery management. Journal of Shellfish Research, 22:330.

Grizzle, R.E., E.E. Hofmann, J.M. Klinck, E.N. Powell, J. N. Kraeuter, V.M. Bricelj and S.C. Buckner. 2003. A simulation model of the population growth of hard clams (Mercenaria mercenaria). IV. Effects of climate change. Journal of Shellfish Research, 22:333.

Hofmann, E.E., J.M. Klinck, E.N Powell, J.N. Kraeuter, V.M. Bricelj, R.E. Grizzle and S.C. Buckner. 2003. A simulation model of the population growth of hard clams (Mercenaria mercenaria). I. Model development and implementation. Journal of Shellfish Research, 22:335.

Jackson, D.L., B.W. MacDonald, B. Vercaemer, X. Guo, A. Mallet and E.L. Kenchinton. 2003. Investigations with Triploid Atlantic Sea Scallops, Placopecten magellanicus, at the Bedford Institute of Oceanography, 2000-2003. Canadian Technical Report of Fisheries and Aquatic Science, 2460: v+ 48p.

Kraeuter, J.N., M.J. Kennish, J. Dobarro, S.R. Fegley and G.E. Flimlin, Jr. 2003. Rehabilitation of hard clam (Mercenaria mercenaria) habitats by shelling-11 years in Barnegat Bay, New Jersey. Journal of Shellfish Research, 22:61-67.

Kraeuter, J.N., S.E. Ford and W. Canzonier. 2003. Increased biomass yield from Delaware Bay oysters (Crassostrea virginica) by alteration of planting season. Journal of Shellfish Research, 22:39-49.

Kraeuter, J.N. and M. W. Luckenback. 2003. Michael Castagna Honored Life Member. Journal of Shellfish Research, 22:615-617.

Kraeuter, J.N., E.N. Powell, E.E. Hofmann, J.M. Klinck, R.E. Grizzle, V.M. Bricelj and S.C. Buckner. 2003. A simulation model of the population growth of hard clams (Mercenaria mercenaria). II. Effects of fishing. Journal of Shellfish Research, 22:338.

Kraeuter, et al. 2003. Report to the Leasing Subcommittee of the Aquaculture Advisory Council. Aquaculture Leasing in New Jersey with Special Emphasis on Development Zones. Leasing Committee. 23 pp + 11 Appendices.

Leavitt, D., J.N. Kraeuter and J. Buttner. 2003. Open-water productions systems, engineering and technology. A White paper to the Northeast Regional Aquaculture Center. (USDA-CSREES).

McDermott, M.H., C Chess, M. Lugo, K. Pflugh, E. Bochenek and J. Burger. 2003. Communicating a complex message to the population most at risk: an outreach strategy for fish consumption advisories. Applied Environmental Education and Communication, 2:39-48.

Powell, E.N., A.J. Bonner, B.M. Muller and E.A. Bochenek. 2003. Vessel Time Allocation In The U.S. Illex illecebrosus. Fishery. Fisheries Research, 61:35-55. DOI: 10.1016/S0165-7836(02)00245-X

Ragone-Calvo, L.M., G.M. Burreson, S.E. Ford, J.N. Kraeuter, D.R. Leavitt, and R.Smolowitz. 2003. Host genetic origin an important determinant of QPX disease. Journal of Shellfish Research, 22:322.

Shumway, S.E., C. Davis, R. Downey, R. Karney, J.N. Kraeuter, J. Parsons, R. Rheault and G.Wikfors. 2003. Shellfish aquaculture in praise of sustainable economics and environment. World Aquaculture, 34:15-19.

Yu, Z. and X. Guo. 2003. Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. Biological Bulletin, 204: 327-338. DOI: 10.2307/1543603

Yu, Z., X. Kong, L. Zhang, X. Guo, J. Xiang. 2003. Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences. Journal of Shellfish Research, 22(1):31-38.

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Allam, B., K. A. Ashton-Alcox and S. E. Ford. 2002. Flow cytometric comparison of haemocytes from three species of bivalve molluscs. Fish and Shellfish Immunology, 13:141-158. DOI: 10.1006/fsim.2001.0389

Allam, B., K. A. Ashton-Alcox and S. E. Ford. 2002. Flow cytometric measurement of hemocytes viability and phagocytic activity in the clam Ruditapes philippinarum. Journal of Shellfish Research, 21(1):13-19.

Allam, B., C. Paillard and S. E. Ford. 2002. Pathogenicity of Vibrio tapetis, the etiological agent of Brown Ring Disease in clams. Diseases of Aquatic Organisms, 48:221-231. DOI: 10.3354/dao048221

Anderson, W.D., C. Battey, M.R. DeVoe, J. N. Kraeuter, A. Segars and J.M. Whetstone. (eds). 2002. Eastern United States Interstate Shellfish Seed Transport Workshop. SC. Sea Grant. 38pp.

Bochenek, E.A. (Editor). 2002. Recommendations and Issues Concerning The Magnuson-Stevens Fishery Conservation and Management Act. Proceedings Of A Workshop Sponsored By The New Jersey Fisheries Information and Development Center. February 2002. 31p.

Bushek, D., S.E. Ford and M.M. Chintala. 2002. Comparison of in vitro cultured and wild-type Perkinsus marinus III. Fecal elimination and its role in transmission. Diseases of Aquatic Organisms, 51:217-225. DOI: 10.3354/dao051217

Chintala, M.M., D. Bushek and S.E. Ford. 2002. Comparison of in vitro cultured and wild-type Perkinsus marinus II. Dosing methods and host response. Diseases of Aquatic Organisms, 51:203-216. DOI: 10.3354/dao051203

Ford, S. E. 2002. Memories of Hal Haskin. Newsletter of the National Shellfisheries Association. August 2002:9-10.

Ford, S. E. 2002. The oyster was his world: remembering Hal Haskin. New Jersey Shoreline. 21(2): 4-7.

Ford, S. E. 2002. Testing for molluscan pathogens: an overview. pp 10-12 in Eastern United States Interstate Shellfish Seed Transport Workshop. SC Marine Resources Center, Charleston, SC.

Ford, S.E., M.M. Chintala and D. Bushek. 2002. Comparison of in vitro cultured and wild-type Perkinsus marinus I. Pathogen virulence. Diseases of Aquatic Organisms, 51:187-201. DOI: 10.3354/dao051187

Ford, S.E., J.N. Kraeuter, R.D. Barber and G. Mathis. 2002. Aquaculture-associated factors in QPX disease of hard clams: density and seed source. Aquaculture 208:23-38. DOI: 10.1016/S0044-8486(01)00795-5

Ford, S.E., J.N Kraeuter and W. Canzonier. 2002. In Memorium. Harold Haley Haskin. Journal of Shellfish Research, 21:441-444.

Kraeuter, J.N., E.N. Powell, E.E. Hofmann, J.M. Klinck, R. Grizzle, M. Bricelj and S. Buckner. 2002. Modeling the growth of the hard clam, Mercenaria mercenaria. Journal of Shellfish Research, 21:399.

McCay, B.J, J. Lamarque, E. Bochenek, T. Johnson, B. Stoffle and D. Wilson. 2002. Social Impact Assessment For Amendment 13, Surfclam And Ocean Quahog Fishery Management Plan: A report to the Mid-Atlantic Fishery Management Council. The Fisheries Project, Rutgers University.

McCay, B.J., B. Oles, B. Stoffle, E. Bochenek, K. St. Martin, G. Graziosi, T. Johnson and J. Lamarque. 2002. Port and Community Profiles, Amendment 9, Squid, Atlantic Mackerel, and Butterfish FMP. A Report to the Mid-Atlantic Fishery Management Council. The Fisheries Project, Rutgers the State University, New Brunswick, New Jersey, June 27, 2002.

McCay, B.J., D. Wilson, J. Lamarque, E. Bochenek, B. Stoffle, B. Oles and T. Johnson. 2002. Port and Community Profiles and Social Impact Assessment, Amendment 13 of the Surfclam and Ocean Quahog Fishery Management Plan: Report to the Mid-Atlantic Fishery Management Council. February, 2002.

Peruzzi, S. and X. Guo. 2002. Tetraploid induction by meiosis inhibition with cytochalasin B in the dwarf surfclam, Mulinia lateralis Say: effects of temperature. Journal of Shellfish Research, 21(2):677-684. DOI: 10.1007/s10126-005-6183-x

Powell, E. N., K. A. Ashton-Alcox, J. A. Dobarro, M. Cummings and S. E. Banta. 2002. The inherent efficiency of oyster dredges in survey mode. Journal of Shellfish Research, 21:691-695.

Powell, E.N., E.A. Bochenek, J.M. Klinck and E.E. Hofmann. 2002. Influence of food quality and quantity on the growth and development of Crassostrea gigas larvae: a modeling approach. Aquaculture, 210:89-117. DOI: 10.1016/S0044-8486(01)00891-2

Wang, Z., X Guo, S.K. Allen, Jr. and R. Wang. 2002. Heterozygosity and body size in triploid Pacific oysters, Crassostrea gigas Thunberg, produced from meiosis II inhibition and tetraploids. Aquaculture, 204(3-4):337-248. DOI: 10.1016/S0044-8486(01)00845-6

Zimmerman, S. R., & E. A. Bochenek. 2002. Evaluation of the effectiveness of circle hooks in New Jersey's recreational summer flounder fishery. Extended Abstract. In J.A. Lucy and A.L. Studholme (editors). Catch and Release in Marine Recreational Fisheries: American Fisheries Society Symposium 30 (pp. 106-109). DOI: 10.47886/9781888569308

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Allam, B., K.A. Ashton-Alcox and S.E. Ford. 2001. Hemocyte activities associated with resistance to Brown Ring Disease in Ruditapes spp. clams. Developmental and Comparative Immunology, 25:365-375. DOI: 10.1016/S0145-305X(00)00072-0

Bochenek, E.A., J.M. Klinck, E.N. Powell and E.E. Hofmann. 2001. A biochemically-based model of the growth and development of Crassostrea gigas larvae. Journal of Shellfish Research, 20(1):243-265.

Bochenek, E.A., E.N. Powell, A.J. Bonner and S.E. Banta. 2001. Scup Mesh-Selectivity Study of The Otter Trawl Fishery In the Mid-Atlantic. Final Report. NFI Scientific Monitoring Committee. 34p.

Dittman, D. E., S. E. Ford and D. K. Padilla. 2001. Effects of Perkinsus marinus on reproduction and condition of the Eastern oysters, Crassostrea virginica, are seasonally variable. Journal of Shellfish Research, 20:1025-1034.

Ford, S. E. 2001. Pests, parasites, diseases, and defense mechanisms. Chapter 12 in: The Biology of the Hard Clam, Mercenaria mercenaria (Linné). (J.N. Kraeuter and M. Castagna, eds). Elsevier Scientific Publishers 591-628. DOI: 10.1016/S0167-9309(01)80040-5

Ford, S. E. and F.J. Borrero. 2001. Epizootiology and pathology of Juvenile Oyster Disease (JOD) in the Eastern oyster, Crassostrea virginica. Journal of Invertebrate Pathology, 78:141-154. DOI: 10.1006/jipa.2001.5052

Ford, S.E., Xu, Z. and DeBrosse, G. 2001. Use of particle filtration and UV irradiation to prevent infection by Haplosporidium nelsoni (MSX) and Perkinsus marinus (Dermo) in hatchery-reared larval and juvenile oysters. Aquaculture, 194:37-49. DOI: 10.1016/S0044-8486(00)00507-X

Guo, X., H. Yang and J. Kraeuter. 2001. Triploid and tetraploid technology for hard clam aquaculture. Jersey Shoreline, 20(2):6-9.

Hofmann, E., S. Ford, E. Powell, J. Klinck. 2001. Modeling studies of the effect of climate variability on MSX disease in eastern oyster (Crassostrea virginica) populations. Hydrobiologia, 460:195-212 DOI: 10.1023/A:1013159329598

Hyun, K., I. Pang, J.M. Klinck, K. Choi, J. Lee, E.N. Powell, E.E. Hofmann and E.A. Bochenek. 2001. The effect of food composition on Pacific oyster, Crassostrea gigas (Thunberg) growth in Korea: a modeling study. Aquaculture, 199:41-62. DOI: 10.1016/S0044-8486(01)00509-9

Kim, Y., E.N. Powell, T.L. Wade, B.J. Presley and J.M. Brooks. 2001. The geographic distribution of population health and contaminent body burden in Gulf of Mexico oysters. Archives of Environmental Contamination and Toxicology, 41:30-46. DOI: 10.1007/s002440010218

Klinck, J.M., E.N. Powell, J.N. Kraeuter, S.E. Ford and K.A. Ashton-Alcox. 2001. A fisheries model for managing the oyster fishery during times of disease. Journal of Shellfish Research, 20:977-989.

Kraeuter, J.N. and M. Castagna (Eds.) 2001. Biology of the Hard Clam. Developments in Aquaculture and Fisheries Science. 31:772 pp. Elsevier, New York.

Kraeuter, J.N. and M. Castagna. 2001. Preface. In: Biology of the Hard Clam. Developments in Aquaculture and Fisheries Science. 31:772 pp. Elsevier, New York.

Kraeuter, J.N. 2001. Chapter 11: Predation. In: Kraeuter, J.N. and M. Castagna (Eds.) 2001. Biology of the Hard Clam. Developments in Aquaculture and Fisheries Science. 31:441-589. Elsevier, New York.

Powell, E.N., A.J. Bonner, S.E. Banta and E.A. Bochenek. 2001. NMFS Spring Survey: Survey Vessel-Commercial Vessel Comparison-Tow Project. Report to the Fisheries Information Development Center. Rutgers University. 57p.

Powell, E.N., K.A. Ashton-Alcox, S.E. Banta, A.J. Bonner. 2001. Impact of repeated dredging on a Delaware Bay oyster reef. Journal of Shellfish Research, 20(3):961-975.

Wang, Y. and X. Guo. 2001. Chromosomal mapping of the vertebrate telomere sequence (TTAGGG)n in four bivalve Molluscs by fluorescence in situ hybridization. Journal of Shellfish Research, 20(3):1187-1190.

Wang, Y., Z. Xu and X. Guo. 2001. A centromeric satellite sequence in the Pacific oyster, Crassostrea gigas (Thunberg) identified by fluorescence in situ hybridization. Marine Biotechnology, 3:486-492. DOI: 10.1007/s10126-001-0063-3

Xu, Z., X. Guo, J. Pierce and P.M. Gaffney, 2001. Chromosomal location of the major ribosomal RNA genes in Crassostrea virginica and Crassostrea gigas. The Veliger, 44:79-83.

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Ashton-Alcox, K.A., B. Allam and S.E. Ford, S.E. 2000. Application of Flow Cytometry to Bivalve Pathology., IN: Recent Advances in Marine Biotechnology, Vol. 5, Immunobiology and Pathology, M. Fingerman and R. Nagabhushanam (eds.), Science Publishers, Inc., New Hampshire, USA, p. 85-124.

Eudeline, B., S.K. Allen, Jr. and X. Guo. 2000. Delayed meiosis and polar body release in eggs of triploid Pacific oysters, Crassostrea gigas, in relation to tetraploid production. Journal of Experimental Marine Biology and Ecology, 248:151-161. DOI: 10.1016/S0022-0981(00)00158-1

Eudeline, B., S.K. Allen, Jr. and X. Guo. 2000. Optimization of tetraploid induction in the Pacific oysters, Crassostrea gigas, using the first polar body as a natural indicator. Aquaculture, 187:73-84. DOI: 10.1016/S0044-8486(00)00302-1

Guo, X. 2000. Aquaculture in China: two decades of rapid growth. Aquaculture Magazine, 26(3):27-36.

Guo X., S. Ford and F. Zhang. 2000. Shellfish culture in China. Part 3, modern species: scallops. Shellfish World, 1(3):12-13.

Guo X., S. Ford and F. Zhang. 2000. Shellfish culture in China. Part 4, modern species: mussels, abalone, pearl oysters. Shellfish World, 1(4):12-13.

Guo, X. and J. Kraeuter. 2000. Aquaculture and breeding technology. The Jersey Shoreline, 19(3):1-4.

Kraeuter, J.N., B. Dewey and M. Rice. 2000. Preliminary response to EPA's AquaculturIndustry Regulatory Development Data Needs. Joint Subcommittee on Aquaculture, Molluscan Shellfish Aquaculture Technical Subgroup, Washington, DC.

Powell, E.N., E.A. Bochenek, S.E. Banta and A.J. Bonner. 2000. Scup Bycatch In The Small-mesh Fisheries of The Mid-Atlantic. Final Report. National Fisheries Institute Scientific Monitoring Committee. 74p.

Wilson, D. and E.A. Bochenek. 2000. Ethnic, cultural and economic factors in responses to risk information: final report on the development of sociodemographic indicators of risk from consumption of recreationally caught fish. NJDEP Division of Science, Research and Technology.

Wilson-Ormond, E.A., M.S. Ellis, E.N. Powell, Y. Kim and S. Li. 2000. Effects of gas-producing platforms on continental shelf megafauna in the northwest Gulf of Mexico: reproductive status and health. International Review of Hydrobiology 85:293-323. DOI: 10.1002/(SICI)1522-2632(200004)85:2/3<293::AID-IROH293>3.0.CO;2-U

Yang, H., T. Gallivan, X. Guo and S.K. Allen, Jr. 2000. A method for preserving oyster tissue samples for flow cytometry. Journal of Shellfish Research, 19(2):835-839.

Yang, H., F. Zhang and X. Guo. 2000. Triploid and tetraploid zhikong scallop, Chlamys farreri Jones et Preston, produced by inhibiting polar body I. Marine Biotechnology, 2:466-475. DOI: 10.1007/PL00021688 (broken)

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Callender, W.R. amd E.N. Powell. 1999. Why did ancient chemosynthetic seep and vent assemblages occur in shallower water than they do today? International Journal of Earth Sciences 88:377-391. DOI: 10.1007/s0053100502 (broken)

Ford, S.E.. 1999. Carl J. Sindermann (biography). Journal of Shellfish Research, 18:341-342.

Ford, S.E.. 1999. Aaron Rosenfield (biography). Journal of Shellfish Research, 18:343-345.

Ford, S.E., E.N. Powell, J.M. Klinck and E.E. Hofmann. 1999. Modeling the MSX parasite in the eastern oyster (Crassostrea virginica). I. Model development, implementation and verification. Journal of Shellfish Research, 18:475-500.

Ford, S.E., A. Schotthoefer and C. Spruck. 1999. In vivo dynamics of the microparasite Perkinsus marinusduring progression and regression of infections in Eastern oysters. Journal of Parasitology 85: 273-282. DOI: 10.2307/3285632

Guo, X., S. Ford and F. Zhang. 1999. Shellfish culture in China. Part 1, general overview. Shellfish World, 1(1):8-10.

Guo, X., S.E. Ford and F. Zhang. 1999. Shellfish culture in China. Part 2 - Traditional species: oysters, blood cockles, razor and Ruditapes clams. Shellfish World 1(2):8-11.

Guo, X., S.E. Ford and F. Zhang. 1999. Molluscan aquaculture in China. Journal of Shellfish Research, 18(1):19-31.

Kim, Y., E.N. Powell, T.L. Wade, B.J. Presley and J.M. Brooks. 1999. Influence of climate change on interannual variation in contaminant body burden in Gulf of Mexico oysters. Marine Environmental Research 48:459-488. DOI: 10.1016/S0141-1136(99)00068-9

Ko, Y-T., M.M-Y. Chan, S.E. Ford and D. Fong. 1999. A PCR-ELISA method for direct detection of the oyster pathogen Haplosporidium nelsoni. Marine Biotechnology 1: 147-154. DOI: 10.1007/PL00011762

Kraeuter, J.N. and S.E. Ford. 1999. Harold H Haskin (biography). Journal of Shellfish Research, 18:337-339.

Paraso, M.C., S.E. Ford, E.N. Powell, E.E. Hofmann and J.M. Klinck. 1999. Modeling the MSX parasite in the eastern oyster (Crassostrea virginica). II. Salinity effects. Journal of Shellfish Research, 18:501-516.

Powell, E.N., R.D. Barber, M.C. Kennicutt II and S.E. Ford. 1999. Influence of parasitism in controlling the health, reproduction and PAH body burden of petroleum seep mussels. Deep-Sea Research I 46: 2053-2078. DOI: 10.1016/S0967-0637(99)00035-7

Powell, E.N., S.E. Ford, J.M. Klinck, E.E. Hofmann and S. Jordan. 1999. Modeling the MSX parasite in the eastern oyster (Crassostrea virginica). III. Delaware and Chesapeake Bay comparisons and the question of transmission. Journal of Shellfish Research, 18:517-537.

Staff, G.M. and E.M. Powell. 1999. Onshore-offshore trends in community structural attributes: death assemblages from the shallow continental shelf of Texas. Continental Shelf Research 19: 717-756. DOI: 10.1016/S0278-4343(98)00108-3

Wang, Z., X. Guo, S.K. Allen, Jr. and R. Wang. 1999. Aneuploid Pacific oyster (Crassostrea gigasThunberg) as incidentals from triploid production. Aquaculture 173: 347-357. DOI: 10.1016/S0044-8486(98)00457-8

Yang, H., X. Guo, Z. Chen and Y. Wang. 1999. Tetraploid induction by inhibiting mitosis I in zhikong scallop, Chlamys farreri. Chinese Journal of Oceanology and Limnology, 17(4):350-358. DOI: 10.1007/BF02842829

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Ashton-Alcox, K.A. and S.E. Ford. 1998. Variability in molluscan hemocytes: a flow cytometric study. Tissue and Cell 30: 195-204. DOI: 10.1016/S0040-8166(98)80068-2

Cook, T., M. Folli, J. Klinck, S. Ford and J. Miller. 1998. The relationship between increasing sea-surface temperature and the northward spread of Perkinsus marinus (Dermo) disease epizootics in oysters. Estuarine Coastal and Shelf Science 46: 587-597. DOI: 10.1006/ecss.1997.0283

Da Ros, L., M.G. Martin, N. Nesto and S.E. Ford. 1998. Preliminary results of a field study on some stress-related parameters in Tapes philippinarumnaturally infected by the protozoan Perkinsussp. Marine Environmental Research 46: 249-252. DOI: 10.1016/S0141-1136(97)00048-2

Dittman, D. E., S. E. Ford and H. H. Haskin. 1998. Growth patterns in oysters, Crassostrea virginica, from different estuaries. Marine Biology, 132:461-469. DOI: 10.1007/s002270050412

Ellis, M.S., R.D. Barber, R.E. Hillman, Y.Kim and E.N. Powell. 1998. Histopathology analysis. In G.G. Lauenstein and A.Y. Cantillo (eds.) Sampling and analytical methods of the National Status and Trends Program Mussel Watch Project: 1993-1996 update. National Oceanographic Atmospheric Association Technical Memorandum NOS ORCA 130: 198-215.

Ellis, M.S., R.D. Barber, R.E. Hillman and E.N. Powell. 1998. Gonadal analysis. In G.G. Lauenstein and A.Y. Cantillo (eds.) Sampling and analytical methods of the National Status and Trends Program Mussel Watch Project: 1993-1996 update. National Oceanographic Atmospheric Association Technical Memorandum NOS ORCA 130: 216-227.

Ford, S.E. and K.A. Ashton-Alcox. 1998. Altered response of oyster hemocytes to Haplosporidium nelsoni (MSX) plasmodia treated with enzymes or metabolic inhibitors. Journal of Invertebrate Pathology 72: 160-166. DOI: 10.1006/jipa.1998.4775

Ford, S.E. and K.A. Ashton-Alcox. 1998. Biotech breakthroughs in oyster research. The Jersey Shore Line 18(3): 2.

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Kim, Y. and E.N. Powell. 1998. Influence of climate change on interannual variation in population attributes of Gulf of Mexico oysters. Journal of Shellfish Research, 17:265-274.

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Kraeuter, J.N., S. Fegley, G.E. Flimlin, Jr. and G. Mathis. 1998. The use of mesh bags for rearing northern quahog (Hard clam), Mercenaria mercenaria seed. Journal of Shellfish Research, 17:205-209.

Oliver, L.M., W.S. Fisher, S.E. Ford, E.M. Burreson, L.M. Calvo, E.B. Sutton, and J.A. Gandy. 1998. Perkinsus marinus tissue distribution and seasonal variation in oysters (Crassostrea virginica) from Florida, Virginia, and New York. Diseases of Aquatic Organisms 34: 51-61. DOI: 10.3354/dao034051

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